Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03055 and PS417_03060 overlap by 4 nucleotides PS417_03060 and PS417_03065 are separated by 72 nucleotides PS417_03065 and PS417_03070 are separated by 125 nucleotides PS417_03070 and PS417_03075 overlap by 4 nucleotides
PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448
_03055
PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888
_03060
PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410
_03065
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
Position (kb) 705
706
707 Strain fitness (log2 ratio) -1
0
1
2 at 705.289 kb on - strand at 705.530 kb on - strand, within PS417_03060 at 705.530 kb on - strand, within PS417_03060 at 705.536 kb on + strand, within PS417_03060 at 705.537 kb on - strand, within PS417_03060 at 705.587 kb on + strand, within PS417_03060 at 705.588 kb on - strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.690 kb on - strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.789 kb on - strand, within PS417_03060 at 705.803 kb on + strand, within PS417_03060 at 705.913 kb on + strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.928 kb on + strand at 705.928 kb on + strand at 705.929 kb on - strand at 706.015 kb on - strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.169 kb on - strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.370 kb on + strand at 706.371 kb on - strand at 706.391 kb on - strand at 706.426 kb on - strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.436 kb on - strand at 706.451 kb on - strand at 706.457 kb on - strand at 706.463 kb on - strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.478 kb on - strand at 706.547 kb on + strand at 706.548 kb on - strand at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070 at 706.978 kb on - strand, within PS417_03070 at 707.005 kb on - strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.137 kb on + strand, within PS417_03070 at 707.170 kb on - strand, within PS417_03070 at 707.215 kb on + strand, within PS417_03070 at 707.217 kb on + strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.323 kb on - strand at 707.323 kb on - strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 705,289 - -0.1 705,530 - PS417_03060 0.19 -0.2 705,530 - PS417_03060 0.19 -0.1 705,536 + PS417_03060 0.20 +1.5 705,537 - PS417_03060 0.21 +0.8 705,587 + PS417_03060 0.32 +1.1 705,588 - PS417_03060 0.32 -0.9 705,597 + PS417_03060 0.34 -1.0 705,597 + PS417_03060 0.34 +0.0 705,598 - PS417_03060 0.34 +0.4 705,598 - PS417_03060 0.34 -0.2 705,690 - PS417_03060 0.55 -1.1 705,788 + PS417_03060 0.77 +0.3 705,788 + PS417_03060 0.77 +0.1 705,789 - PS417_03060 0.77 +0.6 705,803 + PS417_03060 0.81 +0.3 705,913 + +1.1 705,914 - -0.1 705,914 - +0.3 705,914 - -1.0 705,928 + -0.5 705,928 + +0.7 705,929 - +0.9 706,015 - PS417_03065 0.12 -1.0 706,075 + PS417_03065 0.25 -0.5 706,075 + PS417_03065 0.25 -1.0 706,076 - PS417_03065 0.26 -1.3 706,076 - PS417_03065 0.26 -0.4 706,169 - PS417_03065 0.46 +0.3 706,230 + PS417_03065 0.60 -0.6 706,230 + PS417_03065 0.60 +0.1 706,370 + -0.5 706,371 - +0.3 706,391 - -0.3 706,426 - +0.1 706,431 + -0.5 706,431 + +1.7 706,431 + +1.0 706,432 - +0.1 706,432 - -0.2 706,432 - -0.2 706,435 + +0.6 706,435 + +0.9 706,435 + +0.3 706,435 + -0.3 706,435 + +0.1 706,436 - +0.2 706,451 - +0.2 706,457 - +0.9 706,463 - +0.1 706,469 + +0.6 706,469 + +0.6 706,469 + -1.0 706,469 + +0.7 706,470 - -0.0 706,470 - -0.9 706,470 - -1.1 706,473 + +1.6 706,473 + -0.9 706,473 + -0.6 706,473 + -0.6 706,473 + +1.6 706,473 + -0.9 706,474 - -0.1 706,474 - +0.5 706,474 - -0.4 706,474 - +0.1 706,474 - -1.1 706,477 + -0.2 706,477 + -0.4 706,477 + -0.3 706,477 + -0.7 706,478 - -0.1 706,547 + -1.0 706,548 - -0.1 706,718 + PS417_03070 0.23 +1.2 706,718 + PS417_03070 0.23 -0.5 706,718 + PS417_03070 0.23 -0.1 706,719 - PS417_03070 0.23 +2.7 706,861 - PS417_03070 0.41 -0.3 706,864 - PS417_03070 0.42 +1.1 706,978 - PS417_03070 0.56 -1.0 707,005 - PS417_03070 0.59 -0.3 707,102 + PS417_03070 0.72 -1.5 707,102 + PS417_03070 0.72 +0.1 707,137 + PS417_03070 0.76 +0.5 707,170 - PS417_03070 0.80 -0.1 707,215 + PS417_03070 0.86 -0.2 707,217 + PS417_03070 0.86 +0.8 707,218 - PS417_03070 0.86 +0.0 707,218 - PS417_03070 0.86 -0.6 707,218 - PS417_03070 0.86 -0.8 707,246 + +0.2 707,246 + +0.2 707,246 + -0.8 707,246 + -1.0 707,323 - +0.1 707,323 - +1.0 707,326 + -0.3 707,326 + -0.8 707,326 + +0.3 707,327 - -0.1 707,327 - -0.8 707,327 - +0.1 707,329 + -0.6 707,329 + -1.0 707,330 - -0.2 707,394 + PS417_03075 0.27 +0.3 707,394 + PS417_03075 0.27 -1.1 707,395 - PS417_03075 0.27 -0.7 707,395 - PS417_03075 0.27 +1.8
Or see this region's nucleotide sequence