Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00280 and PS417_00285 are separated by 227 nucleotides PS417_00285 and PS417_00290 are separated by 85 nucleotides
PS417_00280: PS417_00280 - radical SAM protein, at 54,309 to 55,367
_00280
PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326
_00285
PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959
_00290
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.730 kb on - strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.201 kb on - strand, within PS417_00280 at 55.201 kb on - strand at 55.272 kb on - strand at 55.314 kb on - strand at 55.365 kb on + strand at 55.525 kb on + strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.577 kb on + strand at 55.610 kb on - strand at 55.939 kb on - strand, within PS417_00285 at 55.939 kb on - strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.324 kb on + strand at 56.437 kb on + strand at 56.763 kb on + strand, within PS417_00290 at 56.763 kb on + strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.768 kb on + strand, within PS417_00290 at 56.769 kb on - strand, within PS417_00290 at 56.801 kb on - strand, within PS417_00290 at 56.958 kb on + strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 57.019 kb on + strand, within PS417_00290 at 57.020 kb on - strand, within PS417_00290
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 54,666 + PS417_00280 0.34 -0.2 54,666 + PS417_00280 0.34 +0.3 54,666 + PS417_00280 0.34 +0.4 54,667 - PS417_00280 0.34 -0.8 54,667 - PS417_00280 0.34 +0.3 54,730 - PS417_00280 0.40 -0.6 55,077 + PS417_00280 0.73 +0.4 55,077 + PS417_00280 0.73 +0.3 55,200 + PS417_00280 0.84 -0.3 55,200 + PS417_00280 0.84 +0.6 55,201 - PS417_00280 0.84 -0.1 55,201 - -0.1 55,272 - +1.2 55,314 - -0.2 55,365 + +1.0 55,525 + +1.0 55,526 - -0.1 55,526 - -1.3 55,526 - -0.5 55,577 + -0.5 55,610 - -0.1 55,939 - PS417_00285 0.47 -1.3 55,939 - PS417_00285 0.47 +0.6 56,196 + PS417_00285 0.82 -1.5 56,196 + PS417_00285 0.82 -0.6 56,201 - PS417_00285 0.83 -0.8 56,201 - PS417_00285 0.83 -0.5 56,201 - PS417_00285 0.83 +0.2 56,216 + PS417_00285 0.85 -2.3 56,216 + PS417_00285 0.85 -1.6 56,216 + PS417_00285 0.85 -0.1 56,216 + PS417_00285 0.85 +0.0 56,324 + -0.6 56,437 + -0.5 56,763 + PS417_00290 0.23 +0.2 56,763 + PS417_00290 0.23 -0.7 56,764 - PS417_00290 0.23 -0.9 56,764 - PS417_00290 0.23 -1.8 56,768 + PS417_00290 0.23 -0.0 56,769 - PS417_00290 0.23 -0.0 56,801 - PS417_00290 0.25 -0.6 56,958 + PS417_00290 0.35 -0.1 56,959 - PS417_00290 0.35 -1.1 56,959 - PS417_00290 0.35 +0.2 57,019 + PS417_00290 0.39 -0.3 57,020 - PS417_00290 0.39 +0.2
Or see this region's nucleotide sequence