Strain Fitness in Pseudomonas simiae WCS417 around PS417_02830

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02825 and PS417_02830 overlap by 1 nucleotidesPS417_02830 and PS417_02835 are separated by 166 nucleotides PS417_02825: PS417_02825 - amino acid ABC transporter permease, at 639,326 to 640,393 _02825 PS417_02830: PS417_02830 - urea ABC transporter permease, at 640,393 to 641,895 _02830 PS417_02835: PS417_02835 - branched-chain amino acid ABC transporter substrate-binding protein, at 642,062 to 643,327 _02835 Position (kb) 640 641 642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 639.576 kb on + strand, within PS417_02825at 639.576 kb on + strand, within PS417_02825at 639.577 kb on - strand, within PS417_02825at 639.577 kb on - strand, within PS417_02825at 640.111 kb on - strand, within PS417_02825at 640.111 kb on - strand, within PS417_02825at 640.215 kb on + strand, within PS417_02825at 640.248 kb on + strand, within PS417_02825at 640.258 kb on + strand, within PS417_02825at 640.259 kb on - strand, within PS417_02825at 640.607 kb on + strand, within PS417_02830at 640.608 kb on - strand, within PS417_02830at 640.854 kb on - strand, within PS417_02830at 641.143 kb on - strand, within PS417_02830at 641.143 kb on - strand, within PS417_02830at 641.144 kb on + strand, within PS417_02830at 641.144 kb on + strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.145 kb on - strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.641 kb on + strand, within PS417_02830at 641.642 kb on - strand, within PS417_02830at 641.642 kb on - strand, within PS417_02830at 641.966 kb on - strandat 642.112 kb on - strandat 642.112 kb on - strandat 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.337 kb on + strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.338 kb on - strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.347 kb on + strand, within PS417_02835at 642.348 kb on - strand, within PS417_02835at 642.348 kb on - strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.351 kb on + strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.352 kb on - strand, within PS417_02835at 642.417 kb on + strand, within PS417_02835at 642.474 kb on + strand, within PS417_02835at 642.474 kb on + strand, within PS417_02835at 642.475 kb on - strand, within PS417_02835at 642.717 kb on + strand, within PS417_02835at 642.718 kb on - strand, within PS417_02835at 642.718 kb on - strand, within PS417_02835at 642.802 kb on - strand, within PS417_02835at 642.858 kb on + strand, within PS417_02835at 642.859 kb on - strand, within PS417_02835

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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639,576 + PS417_02825 0.23 -0.1
639,576 + PS417_02825 0.23 -0.2
639,577 - PS417_02825 0.24 -0.4
639,577 - PS417_02825 0.24 -0.7
640,111 - PS417_02825 0.74 -0.2
640,111 - PS417_02825 0.74 +0.3
640,215 + PS417_02825 0.83 -1.9
640,248 + PS417_02825 0.86 -0.8
640,258 + PS417_02825 0.87 +0.5
640,259 - PS417_02825 0.87 -0.0
640,607 + PS417_02830 0.14 +2.5
640,608 - PS417_02830 0.14 +0.7
640,854 - PS417_02830 0.31 -0.3
641,143 - PS417_02830 0.50 +0.3
641,143 - PS417_02830 0.50 +0.0
641,144 + PS417_02830 0.50 +0.0
641,144 + PS417_02830 0.50 +1.0
641,145 - PS417_02830 0.50 +0.8
641,145 - PS417_02830 0.50 -0.1
641,145 - PS417_02830 0.50 +0.7
641,641 + PS417_02830 0.83 -0.6
641,641 + PS417_02830 0.83 -0.9
641,641 + PS417_02830 0.83 +1.4
641,642 - PS417_02830 0.83 +1.5
641,642 - PS417_02830 0.83 -0.2
641,966 - -2.6
642,112 - +3.6
642,112 - +0.3
642,337 + PS417_02835 0.22 -0.8
642,337 + PS417_02835 0.22 -2.2
642,337 + PS417_02835 0.22 -0.3
642,337 + PS417_02835 0.22 -0.3
642,338 - PS417_02835 0.22 +0.7
642,338 - PS417_02835 0.22 -0.3
642,338 - PS417_02835 0.22 +0.1
642,338 - PS417_02835 0.22 +0.2
642,347 + PS417_02835 0.23 -3.2
642,347 + PS417_02835 0.23 -0.1
642,347 + PS417_02835 0.23 +0.5
642,347 + PS417_02835 0.23 +0.2
642,348 - PS417_02835 0.23 -0.3
642,348 - PS417_02835 0.23 -0.3
642,351 + PS417_02835 0.23 -2.7
642,351 + PS417_02835 0.23 -2.0
642,351 + PS417_02835 0.23 -0.2
642,351 + PS417_02835 0.23 +0.5
642,352 - PS417_02835 0.23 -0.2
642,352 - PS417_02835 0.23 +0.3
642,352 - PS417_02835 0.23 +0.6
642,417 + PS417_02835 0.28 +0.2
642,474 + PS417_02835 0.33 +1.0
642,474 + PS417_02835 0.33 -0.8
642,475 - PS417_02835 0.33 -0.4
642,717 + PS417_02835 0.52 -0.4
642,718 - PS417_02835 0.52 +0.1
642,718 - PS417_02835 0.52 +0.5
642,802 - PS417_02835 0.58 -0.4
642,858 + PS417_02835 0.63 -0.5
642,859 - PS417_02835 0.63 -1.1

Or see this region's nucleotide sequence