Strain Fitness in Pseudomonas simiae WCS417 around PS417_28130
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 6,070,226 | + | PS417_28130 | 0.28 | -1.2 | |
| 6,070,671 | + | PS417_28130 | 0.59 | -1.1 | |
| 6,071,255 | + | -0.0 | |||
| 6,071,469 | + | -0.9 | |||
| 6,071,470 | - | -0.8 | |||
| 6,071,470 | - | -0.5 | |||
| 6,071,470 | - | +0.3 | |||
| 6,071,470 | - | +0.3 | |||
| 6,071,470 | - | -0.6 | |||
| 6,071,472 | - | -0.8 | |||
| 6,071,472 | - | -0.6 | |||
| 6,071,539 | + | -0.0 | |||
| 6,071,688 | - | +1.2 | |||
| 6,071,781 | + | -0.4 | |||
| 6,071,986 | + | PS417_28135 | 0.23 | -0.6 | |
| 6,072,013 | + | PS417_28135 | 0.25 | -1.7 | |
| 6,072,013 | + | PS417_28135 | 0.25 | -2.7 | |
| 6,072,031 | + | PS417_28135 | 0.26 | -0.6 | |
| 6,072,034 | + | PS417_28135 | 0.27 | -1.1 | |
| 6,072,034 | + | PS417_28135 | 0.27 | -0.3 | |
| 6,072,034 | + | PS417_28135 | 0.27 | -0.5 | |
| 6,072,034 | + | PS417_28135 | 0.27 | -1.2 | |
| 6,072,035 | - | PS417_28135 | 0.27 | -1.7 | |
| 6,072,035 | - | PS417_28135 | 0.27 | -1.2 | |
| 6,072,178 | + | PS417_28135 | 0.37 | +1.2 | |
| 6,072,179 | - | PS417_28135 | 0.37 | -0.3 | |
| 6,072,179 | - | PS417_28135 | 0.37 | +0.1 |
Or see this region's nucleotide sequence