Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26955 and PS417_26960 are separated by 85 nucleotides PS417_26960 and PS417_26965 are separated by 144 nucleotides PS417_26965 and PS417_26970 are separated by 51 nucleotides PS417_26970 and PS417_26975 are separated by 78 nucleotides
PS417_26955: PS417_26955 - ATPase P, at 5,821,377 to 5,823,623
_26955
PS417_26960: PS417_26960 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 5,823,709 to 5,824,149
_26960
PS417_26965: PS417_26965 - thymidylate synthase, at 5,824,294 to 5,825,127
_26965
PS417_26970: PS417_26970 - prolipoprotein diacylglyceryl transferase, at 5,825,179 to 5,825,991
_26970
PS417_26975: PS417_26975 - membrane protein, at 5,826,070 to 5,826,852
_26975
Position (kb)
5824
5825
5826 Strain fitness (log2 ratio)
-2
-1
0
1 at 5823.763 kb on + strand, within PS417_26960 at 5824.147 kb on + strand at 5824.148 kb on - strand at 5824.231 kb on + strand at 5824.231 kb on + strand at 5824.232 kb on - strand at 5824.232 kb on - strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.279 kb on - strand at 5825.181 kb on - strand at 5826.006 kb on - strand at 5826.006 kb on - strand at 5826.006 kb on - strand at 5826.048 kb on - strand at 5826.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,823,763 + PS417_26960 0.12 -2.4 5,824,147 + +1.2 5,824,148 - +0.2 5,824,231 + +0.9 5,824,231 + +1.5 5,824,232 - +0.0 5,824,232 - +0.7 5,824,244 + -1.4 5,824,244 + +0.6 5,824,244 + -0.8 5,824,244 + -0.3 5,824,244 + -1.1 5,824,244 + -0.5 5,824,244 + +1.1 5,824,245 - -0.3 5,824,245 - +0.0 5,824,245 - +1.5 5,824,245 - -0.1 5,824,245 - +1.4 5,824,245 - -0.4 5,824,245 - -0.1 5,824,279 - -0.6 5,825,181 - -0.1 5,826,006 - -0.5 5,826,006 - -0.4 5,826,006 - -0.1 5,826,048 - -1.6 5,826,059 - +0.3
Or see this region's nucleotide sequence