Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26410 and PS417_26415 are separated by 54 nucleotides PS417_26415 and PS417_26420 are separated by 282 nucleotides PS417_26420 and PS417_26425 are separated by 61 nucleotides PS417_26425 and PS417_26430 are separated by 29 nucleotides
PS417_26410: PS417_26410 - alginate lyase, at 5,712,237 to 5,712,902
_26410
PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021
_26415
PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639
_26420
PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928
_26425
PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121
_26430
Position (kb) 5712
5713
5714
5715 Strain fitness (log2 ratio) -1
0
1 at 5712.026 kb on + strand at 5712.027 kb on - strand at 5712.154 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.177 kb on - strand at 5712.221 kb on + strand at 5712.221 kb on + strand at 5712.333 kb on + strand, within PS417_26410 at 5712.406 kb on - strand, within PS417_26410 at 5712.452 kb on + strand, within PS417_26410 at 5712.453 kb on - strand, within PS417_26410 at 5712.552 kb on + strand, within PS417_26410 at 5712.552 kb on + strand, within PS417_26410 at 5712.553 kb on - strand, within PS417_26410 at 5712.585 kb on + strand, within PS417_26410 at 5712.586 kb on - strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.709 kb on - strand, within PS417_26410 at 5712.709 kb on - strand, within PS417_26410 at 5712.747 kb on + strand, within PS417_26410 at 5712.748 kb on - strand, within PS417_26410 at 5712.808 kb on - strand, within PS417_26410 at 5712.808 kb on - strand, within PS417_26410 at 5712.825 kb on + strand, within PS417_26410 at 5712.825 kb on + strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.905 kb on - strand at 5714.092 kb on - strand at 5714.154 kb on + strand at 5714.154 kb on + strand at 5714.155 kb on - strand at 5714.238 kb on - strand at 5714.404 kb on + strand, within PS417_26420 at 5714.405 kb on - strand, within PS417_26420 at 5715.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,712,026 + +0.1 5,712,027 - +0.6 5,712,154 + -0.2 5,712,176 + -0.7 5,712,176 + -1.1 5,712,176 + -0.3 5,712,176 + -0.4 5,712,177 - -0.7 5,712,221 + +0.7 5,712,221 + +0.6 5,712,333 + PS417_26410 0.14 -1.7 5,712,406 - PS417_26410 0.25 -1.1 5,712,452 + PS417_26410 0.32 -1.5 5,712,453 - PS417_26410 0.32 +0.1 5,712,552 + PS417_26410 0.47 -0.3 5,712,552 + PS417_26410 0.47 -1.4 5,712,553 - PS417_26410 0.47 +0.3 5,712,585 + PS417_26410 0.52 -0.7 5,712,586 - PS417_26410 0.52 +1.5 5,712,708 + PS417_26410 0.71 -1.2 5,712,708 + PS417_26410 0.71 +0.7 5,712,708 + PS417_26410 0.71 +0.0 5,712,708 + PS417_26410 0.71 +0.7 5,712,708 + PS417_26410 0.71 -0.7 5,712,708 + PS417_26410 0.71 +1.6 5,712,709 - PS417_26410 0.71 -0.0 5,712,709 - PS417_26410 0.71 +0.6 5,712,747 + PS417_26410 0.77 -0.3 5,712,748 - PS417_26410 0.77 +0.5 5,712,808 - PS417_26410 0.86 +0.5 5,712,808 - PS417_26410 0.86 +0.6 5,712,825 + PS417_26410 0.88 -0.1 5,712,825 + PS417_26410 0.88 +0.5 5,712,826 - PS417_26410 0.88 -0.2 5,712,826 - PS417_26410 0.88 +0.4 5,712,826 - PS417_26410 0.88 +1.4 5,712,826 - PS417_26410 0.88 +1.5 5,712,826 - PS417_26410 0.88 -0.0 5,712,905 - +0.4 5,714,092 - -0.5 5,714,154 + +0.6 5,714,154 + +1.2 5,714,155 - -0.0 5,714,238 - +0.4 5,714,404 + PS417_26420 0.30 -1.0 5,714,405 - PS417_26420 0.30 -1.1 5,715,000 + -0.5
Or see this region's nucleotide sequence