Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26200 and PS417_26205 are separated by 90 nucleotides PS417_26205 and PS417_26210 are separated by 176 nucleotides PS417_26210 and PS417_26215 are separated by 195 nucleotides
PS417_26200: PS417_26200 - conjugal transfer protein TraX, at 5,662,165 to 5,662,893
_26200
PS417_26205: PS417_26205 - threonine aldolase, at 5,662,984 to 5,664,024
_26205
PS417_26210: PS417_26210 - hypothetical protein, at 5,664,201 to 5,664,398
_26210
PS417_26215: PS417_26215 - ferredoxin, at 5,664,594 to 5,665,694
_26215
Position (kb) 5662
5663
5664
5665 Strain fitness (log2 ratio) -2
-1
0
1 at 5661.990 kb on - strand at 5662.113 kb on + strand at 5662.114 kb on - strand at 5662.224 kb on - strand at 5662.344 kb on + strand, within PS417_26200 at 5662.345 kb on - strand, within PS417_26200 at 5662.349 kb on + strand, within PS417_26200 at 5662.404 kb on - strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.447 kb on + strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.448 kb on - strand, within PS417_26200 at 5662.517 kb on - strand, within PS417_26200 at 5662.612 kb on - strand, within PS417_26200 at 5662.667 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.763 kb on + strand, within PS417_26200 at 5662.764 kb on - strand, within PS417_26200 at 5662.791 kb on - strand, within PS417_26200 at 5662.894 kb on - strand at 5662.948 kb on + strand at 5663.020 kb on + strand at 5663.021 kb on - strand at 5663.021 kb on - strand at 5663.219 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.438 kb on - strand, within PS417_26205 at 5663.646 kb on + strand, within PS417_26205 at 5663.646 kb on + strand, within PS417_26205 at 5663.647 kb on - strand, within PS417_26205 at 5663.918 kb on - strand, within PS417_26205 at 5663.982 kb on - strand at 5664.080 kb on - strand at 5664.080 kb on - strand at 5664.083 kb on + strand at 5664.216 kb on + strand at 5664.372 kb on + strand, within PS417_26210 at 5664.484 kb on + strand at 5664.644 kb on + strand at 5664.645 kb on - strand at 5664.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,661,990 - -0.4 5,662,113 + -0.1 5,662,114 - -0.1 5,662,224 - -1.0 5,662,344 + PS417_26200 0.25 -0.0 5,662,345 - PS417_26200 0.25 -0.1 5,662,349 + PS417_26200 0.25 +0.6 5,662,404 - PS417_26200 0.33 -0.6 5,662,447 + PS417_26200 0.39 -0.4 5,662,447 + PS417_26200 0.39 -0.2 5,662,447 + PS417_26200 0.39 +1.0 5,662,448 - PS417_26200 0.39 -0.6 5,662,448 - PS417_26200 0.39 -0.8 5,662,448 - PS417_26200 0.39 -0.3 5,662,517 - PS417_26200 0.48 -0.2 5,662,612 - PS417_26200 0.61 +1.6 5,662,667 + PS417_26200 0.69 -1.3 5,662,763 + PS417_26200 0.82 +0.7 5,662,763 + PS417_26200 0.82 -0.6 5,662,763 + PS417_26200 0.82 -0.5 5,662,764 - PS417_26200 0.82 +1.7 5,662,791 - PS417_26200 0.86 -0.2 5,662,894 - -1.7 5,662,948 + -0.1 5,663,020 + -0.8 5,663,021 - +0.5 5,663,021 - +0.9 5,663,219 - PS417_26205 0.23 -0.8 5,663,438 - PS417_26205 0.44 -1.0 5,663,438 - PS417_26205 0.44 -0.1 5,663,438 - PS417_26205 0.44 -0.8 5,663,646 + PS417_26205 0.64 -0.6 5,663,646 + PS417_26205 0.64 -2.0 5,663,647 - PS417_26205 0.64 +0.0 5,663,918 - PS417_26205 0.90 -0.9 5,663,982 - -0.5 5,664,080 - -0.7 5,664,080 - -1.2 5,664,083 + +0.4 5,664,216 + +1.7 5,664,372 + PS417_26210 0.86 -1.6 5,664,484 + +0.1 5,664,644 + -0.1 5,664,645 - +1.6 5,664,647 - -0.9
Or see this region's nucleotide sequence