Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26095 and PS417_26100 are separated by 8 nucleotides PS417_26100 and PS417_26105 are separated by 65 nucleotides PS417_26105 and PS417_26110 overlap by 4 nucleotides
PS417_26095: PS417_26095 - ornithine cyclodeaminase, at 5,641,115 to 5,642,143
_26095
PS417_26100: PS417_26100 - amino acid ABC transporter, at 5,642,152 to 5,642,913
_26100
PS417_26105: PS417_26105 - ABC transporter permease, at 5,642,979 to 5,643,698
_26105
PS417_26110: PS417_26110 - ABC transporter permease, at 5,643,695 to 5,644,405
_26110
Position (kb) 5642
5643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5641.290 kb on - strand, within PS417_26095 at 5641.290 kb on - strand, within PS417_26095 at 5641.338 kb on - strand, within PS417_26095 at 5641.377 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.712 kb on - strand, within PS417_26095 at 5642.093 kb on - strand at 5642.131 kb on - strand at 5642.136 kb on + strand at 5642.137 kb on - strand at 5642.142 kb on - strand at 5642.145 kb on + strand at 5642.272 kb on + strand, within PS417_26100 at 5642.480 kb on - strand, within PS417_26100 at 5642.572 kb on + strand, within PS417_26100 at 5642.573 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.605 kb on + strand, within PS417_26100 at 5642.606 kb on - strand, within PS417_26100 at 5642.705 kb on - strand, within PS417_26100 at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.870 kb on - strand at 5642.870 kb on - strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.872 kb on - strand at 5642.890 kb on + strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.993 kb on - strand at 5642.993 kb on - strand at 5643.160 kb on + strand, within PS417_26105 at 5643.213 kb on + strand, within PS417_26105 at 5643.214 kb on - strand, within PS417_26105 at 5643.216 kb on + strand, within PS417_26105 at 5643.217 kb on - strand, within PS417_26105 at 5643.540 kb on - strand, within PS417_26105 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,641,290 - PS417_26095 0.17 +0.3 5,641,290 - PS417_26095 0.17 +1.0 5,641,338 - PS417_26095 0.22 -0.6 5,641,377 + PS417_26095 0.25 +0.1 5,641,711 + PS417_26095 0.58 -0.2 5,641,711 + PS417_26095 0.58 -0.1 5,641,712 - PS417_26095 0.58 +0.5 5,642,093 - +0.9 5,642,131 - +0.6 5,642,136 + +1.2 5,642,137 - +0.2 5,642,142 - +1.4 5,642,145 + -0.3 5,642,272 + PS417_26100 0.16 +1.4 5,642,480 - PS417_26100 0.43 +0.3 5,642,572 + PS417_26100 0.55 -0.0 5,642,573 - PS417_26100 0.55 -0.8 5,642,591 - PS417_26100 0.58 +0.2 5,642,591 - PS417_26100 0.58 +1.4 5,642,605 + PS417_26100 0.59 -1.0 5,642,606 - PS417_26100 0.60 +0.2 5,642,705 - PS417_26100 0.73 +0.9 5,642,869 + -0.8 5,642,869 + -2.8 5,642,869 + +0.0 5,642,869 + -0.5 5,642,869 + +0.5 5,642,869 + -1.0 5,642,870 - -0.0 5,642,870 - -0.8 5,642,871 + +0.4 5,642,871 + -0.5 5,642,871 + +0.1 5,642,872 - -0.8 5,642,890 + -0.3 5,642,909 - +1.4 5,642,909 - +0.6 5,642,909 - +2.6 5,642,909 - -0.1 5,642,909 - +0.2 5,642,992 + -2.2 5,642,992 + -0.3 5,642,992 + -1.8 5,642,992 + +0.3 5,642,993 - +1.0 5,642,993 - +0.4 5,643,160 + PS417_26105 0.25 +0.2 5,643,213 + PS417_26105 0.33 -0.7 5,643,214 - PS417_26105 0.33 -0.9 5,643,216 + PS417_26105 0.33 -0.6 5,643,217 - PS417_26105 0.33 +2.2 5,643,540 - PS417_26105 0.78 -0.2 5,643,890 + PS417_26110 0.27 -1.0 5,643,890 + PS417_26110 0.27 -0.9 5,643,890 + PS417_26110 0.27 +0.5 5,643,890 + PS417_26110 0.27 -1.0 5,643,890 + PS417_26110 0.27 -2.1 5,643,890 + PS417_26110 0.27 +0.8 5,643,890 + PS417_26110 0.27 -0.4 5,643,890 + PS417_26110 0.27 +1.7 5,643,890 + PS417_26110 0.27 -0.5 5,643,890 + PS417_26110 0.27 +2.2 5,643,890 + PS417_26110 0.27 -2.0 5,643,890 + PS417_26110 0.27 -2.5 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 -0.0 5,643,890 + PS417_26110 0.27 -2.3 5,643,891 - PS417_26110 0.28 +0.2 5,643,891 - PS417_26110 0.28 -0.2 5,643,891 - PS417_26110 0.28 +0.3 5,643,891 - PS417_26110 0.28 +0.7 5,643,891 - PS417_26110 0.28 -0.7 5,643,891 - PS417_26110 0.28 -0.9 5,643,891 - PS417_26110 0.28 +0.1 5,643,891 - PS417_26110 0.28 +0.0 5,643,891 - PS417_26110 0.28 -1.7 5,643,892 + PS417_26110 0.28 +1.0 5,643,892 + PS417_26110 0.28 -0.5 5,643,892 + PS417_26110 0.28 -0.0 5,643,892 + PS417_26110 0.28 -0.8 5,643,892 + PS417_26110 0.28 -0.3 5,643,892 + PS417_26110 0.28 +0.8 5,643,892 + PS417_26110 0.28 +1.6 5,643,892 + PS417_26110 0.28 -0.1 5,643,892 + PS417_26110 0.28 +0.4 5,643,892 + PS417_26110 0.28 -0.4 5,643,893 - PS417_26110 0.28 -0.1 5,643,893 - PS417_26110 0.28 +0.2 5,643,893 - PS417_26110 0.28 -0.9 5,643,893 - PS417_26110 0.28 -1.1 5,643,896 + PS417_26110 0.28 -0.0 5,643,896 + PS417_26110 0.28 -0.3 5,643,897 - PS417_26110 0.28 -0.7 5,643,897 - PS417_26110 0.28 -0.1 5,643,897 - PS417_26110 0.28 +0.9 5,643,897 - PS417_26110 0.28 +1.1
Or see this region's nucleotide sequence