Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25900 and PS417_25905 are separated by 40 nucleotides PS417_25905 and PS417_25910 are separated by 167 nucleotides PS417_25910 and PS417_25915 are separated by 10 nucleotides PS417_25915 and PS417_25920 are separated by 48 nucleotides
PS417_25900: PS417_25900 - LysR family transcriptional regulator, at 5,594,663 to 5,595,532
_25900
PS417_25905: PS417_25905 - AsnC family transcriptional regulator, at 5,595,573 to 5,596,019
_25905
PS417_25910: PS417_25910 - amine oxidase, at 5,596,187 to 5,597,869
_25910
PS417_25915: PS417_25915 - carbon-nitrogen hydrolase, at 5,597,880 to 5,598,674
_25915
PS417_25920: PS417_25920 - pyrroloquinoline quinone biosynthesis protein PqqF, at 5,598,723 to 5,601,065
_25920
Position (kb) 5596
5597
5598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5595.222 kb on + strand, within PS417_25900 at 5595.222 kb on + strand, within PS417_25900 at 5595.222 kb on + strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.223 kb on - strand, within PS417_25900 at 5595.292 kb on - strand, within PS417_25900 at 5595.292 kb on - strand, within PS417_25900 at 5595.530 kb on + strand at 5595.530 kb on + strand at 5595.777 kb on + strand, within PS417_25905 at 5595.778 kb on - strand, within PS417_25905 at 5595.882 kb on + strand, within PS417_25905 at 5595.883 kb on - strand, within PS417_25905 at 5596.120 kb on + strand at 5596.121 kb on - strand at 5596.121 kb on - strand at 5596.122 kb on + strand at 5596.123 kb on - strand at 5596.407 kb on - strand, within PS417_25910 at 5596.407 kb on - strand, within PS417_25910 at 5596.517 kb on + strand, within PS417_25910 at 5596.518 kb on - strand, within PS417_25910 at 5596.518 kb on - strand, within PS417_25910 at 5596.523 kb on + strand, within PS417_25910 at 5596.589 kb on - strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.138 kb on + strand, within PS417_25910 at 5597.139 kb on - strand, within PS417_25910 at 5597.264 kb on + strand, within PS417_25910 at 5597.264 kb on + strand at 5597.384 kb on + strand, within PS417_25910 at 5597.519 kb on + strand, within PS417_25910 at 5597.633 kb on + strand, within PS417_25910 at 5597.634 kb on - strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.648 kb on + strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.649 kb on - strand, within PS417_25910 at 5597.699 kb on - strand, within PS417_25910 at 5597.699 kb on - strand, within PS417_25910 at 5597.832 kb on + strand at 5597.896 kb on - strand at 5597.923 kb on + strand at 5598.312 kb on + strand, within PS417_25915 at 5598.453 kb on + strand, within PS417_25915 at 5598.453 kb on + strand, within PS417_25915 at 5598.462 kb on + strand, within PS417_25915 at 5598.625 kb on - strand at 5598.651 kb on + strand at 5598.705 kb on + strand at 5598.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,595,222 + PS417_25900 0.64 -0.5 5,595,222 + PS417_25900 0.64 -1.0 5,595,222 + PS417_25900 0.64 +0.0 5,595,223 - PS417_25900 0.64 +0.3 5,595,223 - PS417_25900 0.64 -0.9 5,595,223 - PS417_25900 0.64 -0.2 5,595,223 - PS417_25900 0.64 +0.1 5,595,292 - PS417_25900 0.72 +0.1 5,595,292 - PS417_25900 0.72 -0.5 5,595,530 + +1.2 5,595,530 + -0.4 5,595,777 + PS417_25905 0.46 +1.1 5,595,778 - PS417_25905 0.46 -0.4 5,595,882 + PS417_25905 0.69 +1.8 5,595,883 - PS417_25905 0.69 +0.0 5,596,120 + +0.8 5,596,121 - -1.0 5,596,121 - +0.0 5,596,122 + -0.6 5,596,123 - +0.3 5,596,407 - PS417_25910 0.13 -0.5 5,596,407 - PS417_25910 0.13 +0.7 5,596,517 + PS417_25910 0.20 +0.9 5,596,518 - PS417_25910 0.20 -0.4 5,596,518 - PS417_25910 0.20 +0.3 5,596,523 + PS417_25910 0.20 +0.6 5,596,589 - PS417_25910 0.24 +1.6 5,597,138 + PS417_25910 0.57 +0.2 5,597,138 + PS417_25910 0.57 +0.5 5,597,138 + PS417_25910 0.57 -0.2 5,597,139 - PS417_25910 0.57 -0.1 5,597,264 + PS417_25910 0.64 +0.9 5,597,264 + +2.6 5,597,384 + PS417_25910 0.71 +0.3 5,597,519 + PS417_25910 0.79 -0.1 5,597,633 + PS417_25910 0.86 +0.5 5,597,634 - PS417_25910 0.86 -1.8 5,597,648 + PS417_25910 0.87 +0.5 5,597,648 + PS417_25910 0.87 +1.3 5,597,648 + PS417_25910 0.87 +0.5 5,597,648 + PS417_25910 0.87 +0.7 5,597,648 + PS417_25910 0.87 +2.5 5,597,649 - PS417_25910 0.87 -0.5 5,597,649 - PS417_25910 0.87 -0.4 5,597,649 - PS417_25910 0.87 -0.6 5,597,649 - PS417_25910 0.87 +1.4 5,597,699 - PS417_25910 0.90 +0.9 5,597,699 - PS417_25910 0.90 +0.4 5,597,832 + +2.2 5,597,896 - -2.1 5,597,923 + -0.6 5,598,312 + PS417_25915 0.54 -0.7 5,598,453 + PS417_25915 0.72 -0.7 5,598,453 + PS417_25915 0.72 +0.8 5,598,462 + PS417_25915 0.73 -0.4 5,598,625 - -0.0 5,598,651 + +0.4 5,598,705 + +0.5 5,598,705 + +0.3
Or see this region's nucleotide sequence