Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25715 and PS417_25720 are separated by 9 nucleotides PS417_25720 and PS417_25725 are separated by 10 nucleotides PS417_25725 and PS417_25730 are separated by 70 nucleotides PS417_25730 and PS417_25735 overlap by 4 nucleotides
PS417_25715: PS417_25715 - anthranilate phosphoribosyltransferase, at 5,551,575 to 5,552,624
_25715
PS417_25720: PS417_25720 - anthranilate synthase component II, at 5,552,634 to 5,553,227
_25720
PS417_25725: PS417_25725 - anthranilate synthase component I, at 5,553,238 to 5,554,719
_25725
PS417_25730: PS417_25730 - phosphoglycolate phosphatase, at 5,554,790 to 5,555,608
_25730
PS417_25735: PS417_25735 - ribulose-phosphate 3-epimerase, at 5,555,605 to 5,556,279
_25735
Position (kb) 5553
5554
5555 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 5552.892 kb on + strand, within PS417_25720 at 5552.893 kb on - strand, within PS417_25720 at 5552.893 kb on - strand, within PS417_25720 at 5552.949 kb on + strand, within PS417_25720 at 5552.949 kb on + strand, within PS417_25720 at 5552.949 kb on + strand, within PS417_25720 at 5552.950 kb on - strand, within PS417_25720 at 5553.025 kb on + strand, within PS417_25720 at 5553.176 kb on - strand at 5553.176 kb on - strand at 5553.190 kb on + strand at 5553.194 kb on + strand at 5553.194 kb on + strand at 5553.194 kb on + strand at 5553.195 kb on - strand at 5553.195 kb on - strand at 5553.206 kb on - strand at 5553.206 kb on - strand at 5553.391 kb on - strand, within PS417_25725 at 5553.434 kb on + strand, within PS417_25725 at 5553.893 kb on + strand, within PS417_25725 at 5553.893 kb on + strand, within PS417_25725 at 5553.893 kb on + strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.894 kb on - strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.899 kb on + strand, within PS417_25725 at 5553.900 kb on - strand, within PS417_25725 at 5553.900 kb on - strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.011 kb on + strand, within PS417_25725 at 5554.013 kb on + strand, within PS417_25725 at 5554.013 kb on + strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.014 kb on - strand, within PS417_25725 at 5554.043 kb on + strand, within PS417_25725 at 5554.044 kb on - strand, within PS417_25725 at 5554.044 kb on - strand, within PS417_25725 at 5554.057 kb on - strand, within PS417_25725 at 5554.243 kb on + strand, within PS417_25725 at 5554.355 kb on + strand, within PS417_25725 at 5554.355 kb on + strand, within PS417_25725 at 5554.356 kb on - strand, within PS417_25725 at 5554.409 kb on + strand, within PS417_25725 at 5554.409 kb on + strand, within PS417_25725 at 5554.410 kb on - strand at 5554.508 kb on - strand, within PS417_25725 at 5554.597 kb on - strand at 5554.680 kb on - strand at 5554.723 kb on - strand at 5554.744 kb on + strand at 5554.755 kb on + strand at 5554.901 kb on + strand, within PS417_25730 at 5554.902 kb on - strand, within PS417_25730 at 5554.998 kb on + strand, within PS417_25730 at 5554.999 kb on - strand, within PS417_25730 at 5555.004 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.095 kb on + strand, within PS417_25730 at 5555.181 kb on + strand, within PS417_25730
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,552,892 + PS417_25720 0.43 +8.2 5,552,893 - PS417_25720 0.44 +7.8 5,552,893 - PS417_25720 0.44 +7.4 5,552,949 + PS417_25720 0.53 +7.5 5,552,949 + PS417_25720 0.53 +7.2 5,552,949 + PS417_25720 0.53 +7.3 5,552,950 - PS417_25720 0.53 +8.5 5,553,025 + PS417_25720 0.66 +7.7 5,553,176 - +9.0 5,553,176 - +8.4 5,553,190 + +7.6 5,553,194 + +4.6 5,553,194 + +6.4 5,553,194 + +7.3 5,553,195 - +8.7 5,553,195 - +7.6 5,553,206 - +7.2 5,553,206 - +7.8 5,553,391 - PS417_25725 0.10 +4.4 5,553,434 + PS417_25725 0.13 +7.6 5,553,893 + PS417_25725 0.44 +7.6 5,553,893 + PS417_25725 0.44 +7.1 5,553,893 + PS417_25725 0.44 +7.4 5,553,894 - PS417_25725 0.44 +7.6 5,553,894 - PS417_25725 0.44 +8.4 5,553,894 - PS417_25725 0.44 +8.1 5,553,899 + PS417_25725 0.45 +6.5 5,553,899 + PS417_25725 0.45 +7.8 5,553,899 + PS417_25725 0.45 +7.6 5,553,899 + PS417_25725 0.45 +7.4 5,553,899 + PS417_25725 0.45 +7.8 5,553,900 - PS417_25725 0.45 +7.6 5,553,900 - PS417_25725 0.45 +6.4 5,554,011 + PS417_25725 0.52 +7.7 5,554,011 + PS417_25725 0.52 +7.8 5,554,011 + PS417_25725 0.52 +8.3 5,554,013 + PS417_25725 0.52 +7.5 5,554,013 + PS417_25725 0.52 +8.0 5,554,014 - PS417_25725 0.52 +5.6 5,554,014 - PS417_25725 0.52 +7.9 5,554,014 - PS417_25725 0.52 +7.3 5,554,014 - PS417_25725 0.52 +7.9 5,554,043 + PS417_25725 0.54 +6.6 5,554,044 - PS417_25725 0.54 +7.3 5,554,044 - PS417_25725 0.54 +9.0 5,554,057 - PS417_25725 0.55 +7.9 5,554,243 + PS417_25725 0.68 +7.4 5,554,355 + PS417_25725 0.75 +8.4 5,554,355 + PS417_25725 0.75 +8.3 5,554,356 - PS417_25725 0.75 +7.4 5,554,409 + PS417_25725 0.79 +8.1 5,554,409 + PS417_25725 0.79 +6.6 5,554,410 - +6.4 5,554,508 - PS417_25725 0.86 +7.7 5,554,597 - +8.4 5,554,680 - +7.1 5,554,723 - +0.9 5,554,744 + +4.0 5,554,755 + +2.4 5,554,901 + PS417_25730 0.14 +0.7 5,554,902 - PS417_25730 0.14 +0.9 5,554,998 + PS417_25730 0.25 -1.5 5,554,999 - PS417_25730 0.26 -1.3 5,555,004 + PS417_25730 0.26 -2.2 5,555,015 + PS417_25730 0.27 -1.0 5,555,015 + PS417_25730 0.27 -1.1 5,555,015 + PS417_25730 0.27 +1.1 5,555,095 + PS417_25730 0.37 -0.1 5,555,181 + PS417_25730 0.48 -0.5
Or see this region's nucleotide sequence