Strain Fitness in Pseudomonas simiae WCS417 around PS417_22110
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 4,790,367 | - | PS417_22110 | 0.65 | -0.3 | |
| 4,790,511 | - | PS417_22110 | 0.75 | -0.1 | |
| 4,791,006 | + | +0.4 | |||
| 4,791,007 | - | +0.5 | |||
| 4,791,012 | - | -1.2 | |||
| 4,791,054 | + | +1.7 | |||
| 4,791,796 | + | PS417_22115 | 0.82 | +0.2 | |
| 4,791,796 | + | PS417_22115 | 0.82 | -0.9 | |
| 4,791,796 | + | PS417_22115 | 0.82 | +1.1 | |
| 4,791,796 | + | PS417_22115 | 0.82 | -0.3 | |
| 4,791,796 | + | PS417_22115 | 0.82 | +0.2 | |
| 4,791,797 | - | PS417_22115 | 0.82 | +0.5 | |
| 4,791,797 | - | PS417_22115 | 0.82 | +0.0 |
Or see this region's nucleotide sequence