Strain Fitness in Pseudomonas simiae WCS417 around PS417_20860
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 4,528,952 | + | +0.1 | |||
| 4,528,971 | - | +1.0 | |||
| 4,529,047 | + | PS417_20855 | 0.13 | -0.5 | |
| 4,529,048 | - | PS417_20855 | 0.13 | -1.7 | |
| 4,529,711 | - | +0.0 | |||
| 4,529,773 | + | -0.7 | |||
| 4,529,774 | - | -0.3 | |||
| 4,529,774 | - | +0.5 | |||
| 4,529,784 | - | +0.1 | |||
| 4,529,932 | + | +0.6 | |||
| 4,529,976 | + | -0.1 | |||
| 4,530,087 | + | PS417_20860 | 0.18 | -0.2 | |
| 4,530,283 | - | PS417_20860 | 0.35 | -0.8 | |
| 4,530,306 | + | PS417_20860 | 0.37 | -0.8 | |
| 4,530,306 | + | PS417_20860 | 0.37 | -0.5 | |
| 4,530,382 | - | PS417_20860 | 0.43 | -1.3 | |
| 4,530,385 | - | PS417_20860 | 0.44 | -0.3 |
Or see this region's nucleotide sequence