Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19125 and PS417_19130 are separated by 101 nucleotides PS417_19130 and PS417_19135 are separated by 484 nucleotides
PS417_19125: PS417_19125 - LysR family transcriptional regulator, at 4,130,648 to 4,131,544
_19125
PS417_19130: PS417_19130 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) <small>(from data)</small>, at 4,131,646 to 4,132,776
_19130
PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187
_19135
Position (kb) 4131
4132
4133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 4130.811 kb on + strand, within PS417_19125 at 4131.013 kb on + strand, within PS417_19125 at 4131.014 kb on - strand, within PS417_19125 at 4131.207 kb on + strand, within PS417_19125 at 4131.207 kb on + strand, within PS417_19125 at 4131.644 kb on + strand at 4131.644 kb on + strand at 4131.652 kb on - strand at 4131.652 kb on - strand at 4131.652 kb on - strand at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.104 kb on - strand, within PS417_19130 at 4132.104 kb on - strand, within PS417_19130 at 4132.107 kb on + strand, within PS417_19130 at 4132.263 kb on + strand, within PS417_19130 at 4132.264 kb on - strand, within PS417_19130 at 4132.303 kb on + strand, within PS417_19130 at 4132.304 kb on - strand, within PS417_19130 at 4132.304 kb on - strand, within PS417_19130 at 4132.402 kb on - strand, within PS417_19130 at 4132.592 kb on + strand, within PS417_19130 at 4132.593 kb on - strand, within PS417_19130 at 4132.645 kb on + strand, within PS417_19130 at 4132.645 kb on + strand, within PS417_19130 at 4132.885 kb on + strand at 4132.890 kb on + strand at 4132.891 kb on - strand at 4132.918 kb on - strand at 4132.918 kb on - strand at 4132.975 kb on + strand at 4133.135 kb on - strand at 4133.162 kb on + strand at 4133.163 kb on - strand at 4133.167 kb on - strand at 4133.167 kb on - strand at 4133.174 kb on - strand at 4133.246 kb on - strand at 4133.246 kb on - strand at 4133.544 kb on - strand, within PS417_19135
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,130,811 + PS417_19125 0.18 -1.6 4,131,013 + PS417_19125 0.41 +0.5 4,131,014 - PS417_19125 0.41 +0.4 4,131,207 + PS417_19125 0.62 -0.2 4,131,207 + PS417_19125 0.62 -1.4 4,131,644 + -0.9 4,131,644 + -3.1 4,131,652 - -0.9 4,131,652 - -0.4 4,131,652 - +1.2 4,131,895 + PS417_19130 0.22 -0.8 4,131,895 + PS417_19130 0.22 +0.6 4,131,895 + PS417_19130 0.22 -1.2 4,131,895 + PS417_19130 0.22 -0.6 4,131,896 - PS417_19130 0.22 +0.2 4,131,896 - PS417_19130 0.22 +0.3 4,131,896 - PS417_19130 0.22 +4.6 4,131,896 - PS417_19130 0.22 +0.8 4,131,896 - PS417_19130 0.22 +0.2 4,131,896 - PS417_19130 0.22 +1.4 4,132,030 + PS417_19130 0.34 -1.0 4,132,030 + PS417_19130 0.34 -0.7 4,132,030 + PS417_19130 0.34 +1.9 4,132,030 + PS417_19130 0.34 +0.1 4,132,031 - PS417_19130 0.34 -0.3 4,132,031 - PS417_19130 0.34 -1.3 4,132,031 - PS417_19130 0.34 -0.5 4,132,104 - PS417_19130 0.40 -2.0 4,132,104 - PS417_19130 0.40 +1.4 4,132,107 + PS417_19130 0.41 -0.3 4,132,263 + PS417_19130 0.55 -0.1 4,132,264 - PS417_19130 0.55 -0.4 4,132,303 + PS417_19130 0.58 -0.5 4,132,304 - PS417_19130 0.58 -0.1 4,132,304 - PS417_19130 0.58 +0.6 4,132,402 - PS417_19130 0.67 +1.5 4,132,592 + PS417_19130 0.84 -0.6 4,132,593 - PS417_19130 0.84 -0.1 4,132,645 + PS417_19130 0.88 +8.2 4,132,645 + PS417_19130 0.88 +0.1 4,132,885 + -0.9 4,132,890 + -0.4 4,132,891 - -1.1 4,132,918 - +0.9 4,132,918 - -0.2 4,132,975 + -0.7 4,133,135 - -0.9 4,133,162 + -0.0 4,133,163 - -0.4 4,133,167 - +1.0 4,133,167 - +0.7 4,133,174 - -0.6 4,133,246 - -0.1 4,133,246 - +0.8 4,133,544 - PS417_19135 0.31 -0.4
Or see this region's nucleotide sequence