Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18815 and PS417_18820 are separated by 130 nucleotides PS417_18820 and PS417_18825 overlap by 23 nucleotides PS417_18825 and PS417_18830 are separated by 135 nucleotides PS417_18830 and PS417_18835 are separated by 38 nucleotides
PS417_18815: PS417_18815 - glutathione S-transferase, at 4,078,029 to 4,078,655
_18815
PS417_18820: PS417_18820 - methylmalonyl-CoA epimerase, at 4,078,786 to 4,079,241
_18820
PS417_18825: PS417_18825 - TetR family transcriptional regulator, at 4,079,219 to 4,079,845
_18825
PS417_18830: PS417_18830 - phenylacetic acid degradation protein, at 4,079,981 to 4,080,421
_18830
PS417_18835: PS417_18835 - peptide transporter, at 4,080,460 to 4,082,196
_18835
Position (kb) 4079
4080 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4078.249 kb on + strand, within PS417_18815 at 4078.249 kb on + strand, within PS417_18815 at 4078.250 kb on - strand, within PS417_18815 at 4078.250 kb on - strand, within PS417_18815 at 4078.315 kb on + strand, within PS417_18815 at 4078.316 kb on - strand, within PS417_18815 at 4078.375 kb on + strand, within PS417_18815 at 4078.384 kb on + strand, within PS417_18815 at 4078.698 kb on - strand at 4078.698 kb on - strand at 4078.815 kb on - strand at 4078.815 kb on - strand at 4078.846 kb on + strand, within PS417_18820 at 4078.846 kb on + strand, within PS417_18820 at 4078.846 kb on + strand, within PS417_18820 at 4078.847 kb on - strand, within PS417_18820 at 4078.847 kb on - strand, within PS417_18820 at 4078.849 kb on + strand, within PS417_18820 at 4078.919 kb on - strand, within PS417_18820 at 4079.029 kb on + strand, within PS417_18820 at 4079.029 kb on + strand, within PS417_18820 at 4079.030 kb on - strand, within PS417_18820 at 4079.030 kb on - strand, within PS417_18820 at 4079.056 kb on + strand, within PS417_18820 at 4079.057 kb on - strand, within PS417_18820 at 4079.151 kb on + strand, within PS417_18820 at 4079.277 kb on + strand at 4079.326 kb on - strand, within PS417_18825 at 4079.544 kb on + strand, within PS417_18825 at 4079.544 kb on + strand, within PS417_18825 at 4079.545 kb on - strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.683 kb on - strand, within PS417_18825 at 4079.683 kb on - strand, within PS417_18825 at 4079.880 kb on - strand at 4080.012 kb on + strand at 4080.012 kb on + strand at 4080.013 kb on - strand at 4080.263 kb on + strand, within PS417_18830 at 4080.264 kb on - strand, within PS417_18830
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,078,249 + PS417_18815 0.35 -1.9 4,078,249 + PS417_18815 0.35 -1.6 4,078,250 - PS417_18815 0.35 +0.6 4,078,250 - PS417_18815 0.35 -0.9 4,078,315 + PS417_18815 0.46 +1.2 4,078,316 - PS417_18815 0.46 +0.4 4,078,375 + PS417_18815 0.55 -0.0 4,078,384 + PS417_18815 0.57 +0.2 4,078,698 - +0.1 4,078,698 - -0.5 4,078,815 - -0.0 4,078,815 - -0.6 4,078,846 + PS417_18820 0.13 -1.6 4,078,846 + PS417_18820 0.13 -1.2 4,078,846 + PS417_18820 0.13 +0.0 4,078,847 - PS417_18820 0.13 +0.3 4,078,847 - PS417_18820 0.13 -0.9 4,078,849 + PS417_18820 0.14 +0.0 4,078,919 - PS417_18820 0.29 +1.0 4,079,029 + PS417_18820 0.53 +1.0 4,079,029 + PS417_18820 0.53 +0.4 4,079,030 - PS417_18820 0.54 -0.5 4,079,030 - PS417_18820 0.54 -1.2 4,079,056 + PS417_18820 0.59 -0.4 4,079,057 - PS417_18820 0.59 -0.9 4,079,151 + PS417_18820 0.80 +6.7 4,079,277 + +1.2 4,079,326 - PS417_18825 0.17 -0.1 4,079,544 + PS417_18825 0.52 -1.0 4,079,544 + PS417_18825 0.52 -1.2 4,079,545 - PS417_18825 0.52 -0.3 4,079,682 + PS417_18825 0.74 -2.2 4,079,682 + PS417_18825 0.74 -0.2 4,079,682 + -0.3 4,079,682 + PS417_18825 0.74 -0.2 4,079,682 + PS417_18825 0.74 -1.2 4,079,682 + PS417_18825 0.74 -0.6 4,079,683 - PS417_18825 0.74 -0.3 4,079,683 - PS417_18825 0.74 -0.7 4,079,880 - -0.0 4,080,012 + -0.3 4,080,012 + -1.3 4,080,013 - +0.2 4,080,263 + PS417_18830 0.64 +1.0 4,080,264 - PS417_18830 0.64 -2.0
Or see this region's nucleotide sequence