Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
Position (kb) 396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 395.947 kb on - strand at 395.987 kb on - strand, within PS417_01780 at 396.357 kb on + strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.913 kb on - strand, within PS417_01790 at 398.087 kb on - strand, within PS417_01790
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 395,947 - -0.8 395,987 - PS417_01780 0.12 -0.5 396,357 + PS417_01780 0.50 +3.1 396,358 - PS417_01780 0.50 -0.9 396,358 - PS417_01780 0.50 -0.5 396,570 + PS417_01780 0.72 +0.7 396,570 + PS417_01780 0.72 +1.5 396,570 + PS417_01780 0.72 +4.3 396,668 + PS417_01780 0.82 +4.3 396,669 - PS417_01780 0.82 -0.6 396,979 - PS417_01785 0.31 -1.7 396,995 + PS417_01785 0.35 +2.5 397,174 - +2.0 397,299 + +2.9 397,332 - -1.3 397,368 + +1.2 397,372 + -0.7 397,372 + +3.6 397,417 + +0.7 397,421 + +2.7 397,422 - -0.3 397,495 + +1.2 397,495 + -0.4 397,497 + +0.6 397,497 + +3.2 397,497 + +0.5 397,497 + +2.4 397,497 + +1.6 397,497 + +1.7 397,497 + -0.4 397,497 + +1.6 397,497 + +0.6 397,497 + -0.8 397,497 + +2.6 397,497 + -0.4 397,497 + +3.5 397,498 - -1.7 397,498 - -2.0 397,498 - +1.2 397,498 - -2.2 397,498 - -0.4 397,498 - -3.1 397,498 - -2.1 397,498 - -2.8 397,498 - -2.2 397,498 - -0.7 397,498 - -2.7 397,498 - -2.1 397,498 - -1.5 397,498 - -2.1 397,498 - -2.4 397,498 - -2.3 397,502 - -2.4 397,554 + -2.0 397,708 + -3.1 397,766 - PS417_01790 0.13 -0.7 397,912 + PS417_01790 0.21 -0.6 397,912 + PS417_01790 0.21 -2.4 397,913 - PS417_01790 0.21 -1.9 398,087 - PS417_01790 0.31 -2.0
Or see this region's nucleotide sequence