Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00170 and PS417_00175 are separated by 65 nucleotides PS417_00175 and PS417_00180 are separated by 136 nucleotides PS417_00180 and PS417_00185 overlap by 1 nucleotides
PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246
_00170
PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752
_00175
PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698
_00180
PS417_00185: PS417_00185 - tryptophan synthase subunit beta, at 38,698 to 39,939
_00185
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 37.163 kb on - strand at 37.163 kb on - strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.167 kb on - strand at 37.167 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.244 kb on + strand at 37.298 kb on - strand at 37.298 kb on - strand at 37.340 kb on + strand at 37.340 kb on + strand at 37.341 kb on - strand at 37.454 kb on + strand, within PS417_00175 at 37.826 kb on - strand at 37.826 kb on - strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.895 kb on - strand at 38.175 kb on + strand, within PS417_00180 at 38.294 kb on - strand, within PS417_00180 at 38.395 kb on - strand, within PS417_00180 at 38.729 kb on - strand at 38.729 kb on - strand at 38.940 kb on - strand, within PS417_00185 at 39.354 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.646 kb on - strand, within PS417_00185
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 36,944 + PS417_00170 0.77 +2.9 36,944 + PS417_00170 0.77 -1.9 36,944 + PS417_00170 0.77 +0.4 36,944 + PS417_00170 0.77 -0.2 36,944 + PS417_00170 0.77 -0.9 36,944 + PS417_00170 0.77 -1.2 36,944 + PS417_00170 0.77 +1.6 36,944 + PS417_00170 0.77 +0.8 36,945 - PS417_00170 0.77 +0.2 36,945 - PS417_00170 0.77 +0.6 36,966 + PS417_00170 0.79 +0.2 36,966 + PS417_00170 0.79 +0.0 37,163 - -1.4 37,163 - -0.0 37,166 + -0.3 37,166 + +0.8 37,166 + -1.4 37,167 - -0.4 37,167 - +0.9 37,203 - -1.5 37,203 - +1.0 37,203 - -0.9 37,203 - -0.1 37,203 - +0.0 37,206 + -0.3 37,206 + -0.4 37,206 + +0.2 37,206 + +1.3 37,207 - -0.8 37,207 - +1.1 37,207 - +0.0 37,244 + -0.0 37,298 - +0.0 37,298 - +0.7 37,340 + -1.7 37,340 + -0.5 37,341 - +0.1 37,454 + PS417_00175 0.32 +0.7 37,826 - +0.1 37,826 - -0.0 37,894 + +1.7 37,894 + +0.2 37,894 + +0.6 37,895 - +0.9 38,175 + PS417_00180 0.35 +9.2 38,294 - PS417_00180 0.50 +11.8 38,395 - PS417_00180 0.62 +11.1 38,729 - -0.2 38,729 - -0.6 38,940 - PS417_00185 0.19 +11.2 39,354 - PS417_00185 0.53 +10.8 39,513 - PS417_00185 0.66 +11.1 39,513 - PS417_00185 0.66 +11.4 39,513 - PS417_00185 0.66 +10.9 39,646 - PS417_00185 0.76 +11.3
Or see this region's nucleotide sequence