Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16510 and PS417_16515 are separated by 29 nucleotides PS417_16515 and PS417_16520 are separated by 224 nucleotides PS417_16520 and PS417_16525 are separated by 81 nucleotides
PS417_16510: PS417_16510 - Clp protease ClpX, at 3,606,307 to 3,608,577
_16510
PS417_16515: PS417_16515 - Clp protease ClpS, at 3,608,607 to 3,608,975
_16515
PS417_16520: PS417_16520 - cold-shock protein, at 3,609,200 to 3,609,478
_16520
PS417_16525: PS417_16525 - isocitrate dehydrogenase, at 3,609,560 to 3,610,816
_16525
Position (kb)
3608
3609 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3608.107 kb on - strand at 3608.107 kb on - strand, within PS417_16510 at 3608.169 kb on - strand, within PS417_16510 at 3608.169 kb on - strand, within PS417_16510 at 3608.373 kb on + strand at 3608.374 kb on - strand at 3608.577 kb on + strand at 3608.715 kb on + strand, within PS417_16515 at 3608.749 kb on - strand, within PS417_16515 at 3609.005 kb on - strand at 3609.078 kb on + strand at 3609.079 kb on - strand at 3609.088 kb on - strand at 3609.088 kb on - strand at 3609.128 kb on + strand at 3609.128 kb on + strand at 3609.162 kb on + strand at 3609.162 kb on + strand at 3609.163 kb on - strand at 3609.199 kb on + strand at 3609.200 kb on - strand at 3609.200 kb on - strand at 3609.302 kb on + strand, within PS417_16520 at 3609.302 kb on + strand, within PS417_16520 at 3609.303 kb on - strand, within PS417_16520 at 3609.457 kb on - strand at 3609.561 kb on + strand at 3609.562 kb on - strand at 3609.562 kb on - strand at 3609.565 kb on + strand at 3609.566 kb on - strand at 3609.566 kb on - strand at 3609.623 kb on - strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.640 kb on - strand at 3609.640 kb on - strand at 3609.640 kb on - strand at 3609.644 kb on + strand at 3609.644 kb on + strand at 3609.777 kb on + strand, within PS417_16525 at 3609.777 kb on + strand, within PS417_16525 at 3609.790 kb on + strand, within PS417_16525 at 3609.888 kb on + strand, within PS417_16525 at 3609.889 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 3,608,107 - -0.4 3,608,107 - PS417_16510 0.79 -2.2 3,608,169 - PS417_16510 0.82 -1.7 3,608,169 - PS417_16510 0.82 -1.1 3,608,373 + -0.5 3,608,374 - +0.3 3,608,577 + -1.3 3,608,715 + PS417_16515 0.29 -2.0 3,608,749 - PS417_16515 0.38 -1.0 3,609,005 - +4.4 3,609,078 + -1.0 3,609,079 - +2.1 3,609,088 - +2.5 3,609,088 - +1.7 3,609,128 + -0.5 3,609,128 + -0.0 3,609,162 + -1.6 3,609,162 + -1.0 3,609,163 - -0.6 3,609,199 + -0.7 3,609,200 - +1.2 3,609,200 - +2.0 3,609,302 + PS417_16520 0.37 -0.2 3,609,302 + PS417_16520 0.37 +0.9 3,609,303 - PS417_16520 0.37 +0.2 3,609,457 - -1.1 3,609,561 + -0.2 3,609,562 - +0.4 3,609,562 - +0.3 3,609,565 + -0.3 3,609,566 - +0.7 3,609,566 - -0.9 3,609,623 - +1.0 3,609,639 + +0.8 3,609,639 + -0.2 3,609,639 + +0.7 3,609,639 + -1.1 3,609,640 - -0.9 3,609,640 - -0.1 3,609,640 - -0.1 3,609,644 + -1.8 3,609,644 + -0.9 3,609,777 + PS417_16525 0.17 -0.6 3,609,777 + PS417_16525 0.17 -1.6 3,609,790 + PS417_16525 0.18 -0.1 3,609,888 + PS417_16525 0.26 -0.2 3,609,889 - PS417_16525 0.26 +0.9 3,609,939 - PS417_16525 0.30 +1.5 3,609,939 - PS417_16525 0.30 +1.6 3,609,939 - PS417_16525 0.30 -1.1
Or see this region's nucleotide sequence