Strain Fitness in Pseudomonas simiae WCS417 around PS417_14310

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14300 and PS417_14305 are separated by 14 nucleotidesPS417_14305 and PS417_14310 are separated by 42 nucleotidesPS417_14310 and PS417_14315 are separated by 61 nucleotides PS417_14300: PS417_14300 - aspartate:proton symporter, at 3,129,584 to 3,131,203 _14300 PS417_14305: PS417_14305 - hydroxyproline-2-epimerase, at 3,131,218 to 3,132,144 _14305 PS417_14310: PS417_14310 - dihydrodipicolinate synthetase, at 3,132,187 to 3,133,134 _14310 PS417_14315: PS417_14315 - 2,5-dioxovalerate dehydrogenase, at 3,133,196 to 3,134,767 _14315 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3131.390 kb on + strand, within PS417_14305at 3131.407 kb on + strandat 3131.677 kb on + strand, within PS417_14305at 3131.908 kb on + strandat 3132.034 kb on + strand, within PS417_14305at 3132.082 kb on + strandat 3132.083 kb on - strandat 3132.160 kb on + strandat 3132.319 kb on + strand, within PS417_14310at 3132.592 kb on + strand, within PS417_14310at 3132.592 kb on + strand, within PS417_14310at 3132.605 kb on - strand, within PS417_14310at 3132.776 kb on + strand, within PS417_14310at 3132.973 kb on + strand, within PS417_14310at 3132.974 kb on - strand, within PS417_14310at 3132.976 kb on + strand, within PS417_14310at 3132.976 kb on + strand, within PS417_14310at 3132.976 kb on + strand, within PS417_14310at 3132.977 kb on - strand, within PS417_14310at 3132.977 kb on - strand, within PS417_14310at 3133.013 kb on - strand, within PS417_14310at 3133.182 kb on - strandat 3133.545 kb on + strand, within PS417_14315at 3134.012 kb on + strand, within PS417_14315at 3134.013 kb on - strand, within PS417_14315at 3134.013 kb on - strand, within PS417_14315

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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3,131,390 + PS417_14305 0.19 +0.4
3,131,407 + +0.5
3,131,677 + PS417_14305 0.50 -0.8
3,131,908 + +1.2
3,132,034 + PS417_14305 0.88 +0.0
3,132,082 + -0.3
3,132,083 - -2.3
3,132,160 + +1.3
3,132,319 + PS417_14310 0.14 -1.1
3,132,592 + PS417_14310 0.43 -0.2
3,132,592 + PS417_14310 0.43 -0.0
3,132,605 - PS417_14310 0.44 -0.0
3,132,776 + PS417_14310 0.62 +0.3
3,132,973 + PS417_14310 0.83 -1.4
3,132,974 - PS417_14310 0.83 -2.2
3,132,976 + PS417_14310 0.83 +0.2
3,132,976 + PS417_14310 0.83 -2.1
3,132,976 + PS417_14310 0.83 -0.2
3,132,977 - PS417_14310 0.83 -1.4
3,132,977 - PS417_14310 0.83 -0.9
3,133,013 - PS417_14310 0.87 -1.0
3,133,182 - +2.9
3,133,545 + PS417_14315 0.22 -1.9
3,134,012 + PS417_14315 0.52 -0.7
3,134,013 - PS417_14315 0.52 +0.8
3,134,013 - PS417_14315 0.52 -1.3

Or see this region's nucleotide sequence