Strain Fitness in Pseudomonas simiae WCS417 around PS417_14310
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
---|---|---|---|---|---|
remove | |||||
3,131,390 | + | PS417_14305 | 0.19 | +0.4 | |
3,131,407 | + | +0.5 | |||
3,131,677 | + | PS417_14305 | 0.50 | -0.8 | |
3,131,908 | + | +1.2 | |||
3,132,034 | + | PS417_14305 | 0.88 | +0.0 | |
3,132,082 | + | -0.3 | |||
3,132,083 | - | -2.3 | |||
3,132,160 | + | +1.3 | |||
3,132,319 | + | PS417_14310 | 0.14 | -1.1 | |
3,132,592 | + | PS417_14310 | 0.43 | -0.2 | |
3,132,592 | + | PS417_14310 | 0.43 | -0.0 | |
3,132,605 | - | PS417_14310 | 0.44 | -0.0 | |
3,132,776 | + | PS417_14310 | 0.62 | +0.3 | |
3,132,973 | + | PS417_14310 | 0.83 | -1.4 | |
3,132,974 | - | PS417_14310 | 0.83 | -2.2 | |
3,132,976 | + | PS417_14310 | 0.83 | +0.2 | |
3,132,976 | + | PS417_14310 | 0.83 | -2.1 | |
3,132,976 | + | PS417_14310 | 0.83 | -0.2 | |
3,132,977 | - | PS417_14310 | 0.83 | -1.4 | |
3,132,977 | - | PS417_14310 | 0.83 | -0.9 | |
3,133,013 | - | PS417_14310 | 0.87 | -1.0 | |
3,133,182 | - | +2.9 | |||
3,133,545 | + | PS417_14315 | 0.22 | -1.9 | |
3,134,012 | + | PS417_14315 | 0.52 | -0.7 | |
3,134,013 | - | PS417_14315 | 0.52 | +0.8 | |
3,134,013 | - | PS417_14315 | 0.52 | -1.3 |
Or see this region's nucleotide sequence