Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01355 and PS417_01360 are separated by 202 nucleotides PS417_01360 and PS417_01365 are separated by 20 nucleotides PS417_01365 and PS417_01370 are separated by 3 nucleotides
PS417_01355: PS417_01355 - membrane protein, at 296,093 to 297,409
_01355
PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815
_01360
PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537
_01365
PS417_01370: PS417_01370 - peptidase M48, at 298,541 to 300,118
_01370
Position (kb) 297
298 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 296.714 kb on + strand, within PS417_01355 at 296.715 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.762 kb on + strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.814 kb on - strand, within PS417_01355 at 297.086 kb on + strand, within PS417_01355 at 297.176 kb on + strand, within PS417_01355 at 297.177 kb on - strand, within PS417_01355 at 297.189 kb on - strand, within PS417_01355 at 297.218 kb on - strand, within PS417_01355 at 297.266 kb on + strand, within PS417_01355 at 297.267 kb on - strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.350 kb on + strand at 297.351 kb on - strand at 297.407 kb on + strand at 297.408 kb on - strand at 297.408 kb on - strand at 297.469 kb on + strand at 297.518 kb on + strand at 297.518 kb on + strand at 297.519 kb on - strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.651 kb on - strand, within PS417_01360 at 297.771 kb on + strand, within PS417_01360 at 298.100 kb on + strand at 298.154 kb on + strand, within PS417_01365 at 298.154 kb on + strand, within PS417_01365 at 298.509 kb on + strand at 298.510 kb on - strand at 298.579 kb on + strand at 298.579 kb on + strand at 298.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 296,714 + PS417_01355 0.47 +6.3 296,715 - PS417_01355 0.47 +8.0 296,726 - PS417_01355 0.48 +7.4 296,726 - PS417_01355 0.48 +7.4 296,762 + PS417_01355 0.51 +8.4 296,799 - PS417_01355 0.54 +8.2 296,799 - PS417_01355 0.54 +5.6 296,799 - PS417_01355 0.54 +6.9 296,814 - PS417_01355 0.55 +8.3 297,086 + PS417_01355 0.75 +8.3 297,176 + PS417_01355 0.82 +9.0 297,177 - PS417_01355 0.82 +1.5 297,189 - PS417_01355 0.83 +7.7 297,218 - PS417_01355 0.85 +8.0 297,266 + PS417_01355 0.89 +7.6 297,267 - PS417_01355 0.89 +4.2 297,273 + PS417_01355 0.90 +8.5 297,273 + PS417_01355 0.90 +7.1 297,274 - PS417_01355 0.90 +9.0 297,274 - PS417_01355 0.90 +8.4 297,350 + +5.3 297,351 - +5.5 297,407 + +3.7 297,408 - +2.5 297,408 - +0.1 297,469 + +0.4 297,518 + +0.2 297,518 + -0.4 297,519 - +0.6 297,555 + -0.3 297,555 + +1.6 297,555 + +0.5 297,651 - PS417_01360 0.19 +0.2 297,771 + PS417_01360 0.78 -0.6 298,100 + +2.2 298,154 + PS417_01365 0.45 +0.3 298,154 + PS417_01365 0.45 +1.5 298,509 + +1.4 298,510 - +0.2 298,579 + -0.7 298,579 + +0.0 298,656 - +0.5
Or see this region's nucleotide sequence