Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01350 and PS417_01355 are separated by 411 nucleotides PS417_01355 and PS417_01360 are separated by 202 nucleotides PS417_01360 and PS417_01365 are separated by 20 nucleotides
PS417_01350: PS417_01350 - TonB-dependent receptor, at 293,594 to 295,681
_01350
PS417_01355: PS417_01355 - membrane protein, at 296,093 to 297,409
_01355
PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815
_01360
PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537
_01365
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 295.140 kb on + strand, within PS417_01350 at 295.314 kb on + strand, within PS417_01350 at 295.314 kb on + strand, within PS417_01350 at 295.315 kb on - strand, within PS417_01350 at 295.315 kb on - strand, within PS417_01350 at 295.345 kb on - strand, within PS417_01350 at 295.507 kb on - strand at 295.603 kb on + strand at 295.603 kb on + strand at 295.604 kb on - strand at 295.785 kb on + strand at 295.788 kb on + strand at 295.789 kb on - strand at 295.843 kb on + strand at 295.844 kb on - strand at 295.844 kb on - strand at 295.855 kb on + strand at 295.900 kb on + strand at 295.901 kb on - strand at 295.984 kb on + strand at 296.084 kb on + strand at 296.084 kb on + strand at 296.085 kb on - strand at 296.086 kb on + strand at 296.087 kb on - strand at 296.087 kb on - strand at 296.087 kb on - strand at 296.222 kb on + strand at 296.223 kb on - strand at 296.223 kb on - strand at 296.223 kb on - strand at 296.237 kb on + strand, within PS417_01355 at 296.238 kb on - strand, within PS417_01355 at 296.349 kb on - strand, within PS417_01355 at 296.525 kb on + strand, within PS417_01355 at 296.525 kb on + strand, within PS417_01355 at 296.561 kb on + strand, within PS417_01355 at 296.562 kb on - strand at 296.562 kb on - strand, within PS417_01355 at 296.591 kb on + strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.714 kb on + strand, within PS417_01355 at 296.715 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.762 kb on + strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.814 kb on - strand, within PS417_01355 at 297.086 kb on + strand, within PS417_01355 at 297.176 kb on + strand, within PS417_01355 at 297.177 kb on - strand, within PS417_01355 at 297.189 kb on - strand, within PS417_01355 at 297.218 kb on - strand, within PS417_01355 at 297.266 kb on + strand, within PS417_01355 at 297.267 kb on - strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.350 kb on + strand at 297.351 kb on - strand at 297.407 kb on + strand at 297.408 kb on - strand at 297.408 kb on - strand at 297.469 kb on + strand at 297.518 kb on + strand at 297.518 kb on + strand at 297.519 kb on - strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.651 kb on - strand, within PS417_01360 at 297.771 kb on + strand, within PS417_01360 at 298.100 kb on + strand at 298.154 kb on + strand, within PS417_01365 at 298.154 kb on + strand, within PS417_01365
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 295,140 + PS417_01350 0.74 -0.6 295,314 + PS417_01350 0.82 -0.2 295,314 + PS417_01350 0.82 -2.0 295,315 - PS417_01350 0.82 +0.6 295,315 - PS417_01350 0.82 -1.6 295,345 - PS417_01350 0.84 +0.0 295,507 - -0.6 295,603 + -0.5 295,603 + +0.4 295,604 - -0.2 295,785 + +0.6 295,788 + +0.0 295,789 - +4.6 295,843 + -0.3 295,844 - +9.5 295,844 - +2.6 295,855 + -1.5 295,900 + +0.6 295,901 - +8.0 295,984 + -2.2 296,084 + +6.9 296,084 + +7.7 296,085 - +7.6 296,086 + +6.4 296,087 - +7.9 296,087 - +6.0 296,087 - +8.2 296,222 + +8.4 296,223 - +9.1 296,223 - +7.5 296,223 - +8.4 296,237 + PS417_01355 0.11 +7.2 296,238 - PS417_01355 0.11 +9.1 296,349 - PS417_01355 0.19 +7.1 296,525 + PS417_01355 0.33 +7.0 296,525 + PS417_01355 0.33 +7.6 296,561 + PS417_01355 0.36 +6.0 296,562 - +6.5 296,562 - PS417_01355 0.36 +8.0 296,591 + PS417_01355 0.38 +8.8 296,592 - PS417_01355 0.38 +7.7 296,592 - PS417_01355 0.38 +4.5 296,592 - PS417_01355 0.38 +7.0 296,714 + PS417_01355 0.47 +6.3 296,715 - PS417_01355 0.47 +8.0 296,726 - PS417_01355 0.48 +7.4 296,726 - PS417_01355 0.48 +7.4 296,762 + PS417_01355 0.51 +8.4 296,799 - PS417_01355 0.54 +8.2 296,799 - PS417_01355 0.54 +5.6 296,799 - PS417_01355 0.54 +6.9 296,814 - PS417_01355 0.55 +8.3 297,086 + PS417_01355 0.75 +8.3 297,176 + PS417_01355 0.82 +9.0 297,177 - PS417_01355 0.82 +1.5 297,189 - PS417_01355 0.83 +7.7 297,218 - PS417_01355 0.85 +8.0 297,266 + PS417_01355 0.89 +7.6 297,267 - PS417_01355 0.89 +4.2 297,273 + PS417_01355 0.90 +8.5 297,273 + PS417_01355 0.90 +7.1 297,274 - PS417_01355 0.90 +9.0 297,274 - PS417_01355 0.90 +8.4 297,350 + +5.3 297,351 - +5.5 297,407 + +3.7 297,408 - +2.5 297,408 - +0.1 297,469 + +0.4 297,518 + +0.2 297,518 + -0.4 297,519 - +0.6 297,555 + -0.3 297,555 + +1.6 297,555 + +0.5 297,651 - PS417_01360 0.19 +0.2 297,771 + PS417_01360 0.78 -0.6 298,100 + +2.2 298,154 + PS417_01365 0.45 +0.3 298,154 + PS417_01365 0.45 +1.5
Or see this region's nucleotide sequence