Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01340 and PS417_01345 are separated by 233 nucleotides PS417_01345 and PS417_01350 are separated by 38 nucleotides
PS417_01340: PS417_01340 - agmatine deiminase, at 291,997 to 293,103
_01340
PS417_01345: PS417_01345 - hypothetical protein, at 293,337 to 293,555
_01345
PS417_01350: PS417_01350 - TonB-dependent receptor, at 293,594 to 295,681
_01350
Position (kb) 293
294 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 292.723 kb on + strand, within PS417_01340 at 292.723 kb on + strand, within PS417_01340 at 292.724 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.822 kb on + strand, within PS417_01340 at 292.878 kb on + strand, within PS417_01340 at 292.879 kb on - strand, within PS417_01340 at 292.906 kb on + strand, within PS417_01340 at 292.907 kb on - strand, within PS417_01340 at 292.907 kb on - strand, within PS417_01340 at 293.114 kb on - strand at 293.211 kb on - strand at 293.231 kb on + strand at 293.232 kb on - strand at 293.289 kb on + strand at 293.300 kb on + strand at 293.301 kb on - strand at 293.553 kb on + strand at 293.576 kb on - strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.605 kb on - strand at 293.676 kb on + strand at 293.676 kb on + strand at 293.761 kb on - strand at 293.885 kb on + strand, within PS417_01350 at 293.968 kb on - strand, within PS417_01350 at 293.968 kb on - strand, within PS417_01350 at 294.078 kb on + strand, within PS417_01350 at 294.079 kb on - strand, within PS417_01350 at 294.079 kb on - strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.262 kb on - strand, within PS417_01350 at 294.262 kb on - strand, within PS417_01350 at 294.438 kb on + strand, within PS417_01350 at 294.438 kb on + strand, within PS417_01350
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 292,723 + PS417_01340 0.66 +2.4 292,723 + PS417_01340 0.66 -0.4 292,724 - PS417_01340 0.66 +2.7 292,798 - PS417_01340 0.72 +1.5 292,798 - PS417_01340 0.72 +2.0 292,822 + PS417_01340 0.75 +1.1 292,878 + PS417_01340 0.80 +3.9 292,879 - PS417_01340 0.80 +2.3 292,906 + PS417_01340 0.82 +3.5 292,907 - PS417_01340 0.82 -1.1 292,907 - PS417_01340 0.82 +2.9 293,114 - -0.3 293,211 - -1.7 293,231 + -0.0 293,232 - -1.3 293,289 + +0.9 293,300 + -0.6 293,301 - -1.6 293,553 + -2.2 293,576 - -1.0 293,604 + +0.1 293,604 + -2.3 293,604 + -1.2 293,604 + +0.2 293,605 - +0.0 293,676 + +0.1 293,676 + -0.1 293,761 - -1.3 293,885 + PS417_01350 0.14 +0.8 293,968 - PS417_01350 0.18 -1.0 293,968 - PS417_01350 0.18 +0.5 294,078 + PS417_01350 0.23 +0.4 294,079 - PS417_01350 0.23 -0.5 294,079 - PS417_01350 0.23 +0.2 294,261 + PS417_01350 0.32 +0.2 294,261 + PS417_01350 0.32 +0.6 294,261 + PS417_01350 0.32 +1.5 294,261 + PS417_01350 0.32 +2.0 294,262 - PS417_01350 0.32 -2.3 294,262 - PS417_01350 0.32 +1.9 294,438 + PS417_01350 0.40 +0.2 294,438 + PS417_01350 0.40 +0.4
Or see this region's nucleotide sequence