Strain Fitness in Pseudomonas simiae WCS417 around PS417_12590
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,740,063 | - | PS417_12585 | 0.69 | +1.8 | |
| 2,740,158 | - | PS417_12585 | 0.72 | +2.8 | |
| 2,740,206 | + | PS417_12585 | 0.73 | +3.8 | |
| 2,740,497 | + | PS417_12585 | 0.83 | +2.7 | |
| 2,740,798 | - | +2.1 | |||
| 2,740,882 | - | +2.4 | |||
| 2,740,884 | - | +1.6 | |||
| 2,740,890 | + | +2.5 | |||
| 2,741,012 | - | +1.6 | |||
| 2,742,276 | + | +1.0 | |||
| 2,742,276 | + | +1.0 | |||
| 2,742,277 | - | -2.2 | |||
| 2,742,292 | + | +1.1 | |||
| 2,742,292 | + | -0.0 | |||
| 2,742,293 | - | -1.1 | |||
| 2,742,293 | - | -1.6 | |||
| 2,742,293 | - | -2.9 | |||
| 2,742,293 | - | -0.2 | |||
| 2,742,295 | - | -1.3 | |||
| 2,742,361 | + | +0.8 | |||
| 2,742,757 | + | PS417_12595 | 0.42 | +0.3 | |
| 2,742,940 | + | PS417_12595 | 0.68 | +0.3 | |
| 2,743,132 | + | +0.0 |
Or see this region's nucleotide sequence