Strain Fitness in Pseudomonas simiae WCS417 around PS417_12195
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,648,674 | - | PS417_12190 | 0.53 | +2.2 | |
| 2,649,210 | + | PS417_12190 | 0.86 | +1.3 | |
| 2,649,752 | - | PS417_12195 | 0.31 | +1.0 | |
| 2,649,752 | - | PS417_12195 | 0.31 | +2.0 | |
| 2,649,884 | - | PS417_12195 | 0.44 | +1.0 | |
| 2,649,884 | - | PS417_12195 | 0.44 | +0.5 | |
| 2,650,040 | - | PS417_12195 | 0.60 | +1.0 | |
| 2,650,040 | - | PS417_12195 | 0.60 | +1.1 | |
| 2,650,132 | + | PS417_12195 | 0.69 | +1.2 | |
| 2,650,147 | + | PS417_12195 | 0.70 | +2.6 | |
| 2,650,210 | + | PS417_12195 | 0.76 | +0.3 | |
| 2,650,211 | - | PS417_12195 | 0.76 | -0.5 | |
| 2,650,721 | - | PS417_12200 | 0.25 | +1.6 | |
| 2,650,721 | - | PS417_12200 | 0.25 | +1.3 | |
| 2,650,721 | - | PS417_12200 | 0.25 | +1.3 | |
| 2,650,779 | - | PS417_12200 | 0.30 | +1.4 | |
| 2,651,112 | - | PS417_12200 | 0.61 | +1.3 | |
| 2,651,112 | - | PS417_12200 | 0.61 | +1.0 | |
| 2,651,277 | - | PS417_12200 | 0.77 | +1.7 | |
| 2,651,277 | - | PS417_12200 | 0.77 | +0.4 | |
| 2,651,331 | - | PS417_12200 | 0.82 | +1.4 |
Or see this region's nucleotide sequence