Strain Fitness in Pseudomonas simiae WCS417 around PS417_11630
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,500,932 | + | PS417_11625 | 0.41 | -0.0 | |
| 2,500,933 | - | PS417_11625 | 0.41 | -0.3 | |
| 2,500,933 | - | PS417_11625 | 0.41 | +0.5 | |
| 2,501,045 | + | PS417_11625 | 0.49 | +4.9 | |
| 2,501,046 | - | PS417_11625 | 0.49 | -0.1 | |
| 2,501,806 | + | +0.7 | |||
| 2,502,124 | + | +3.1 | |||
| 2,502,125 | - | PS417_11630 | 0.28 | -0.3 | |
| 2,502,283 | + | PS417_11630 | 0.40 | -0.3 | |
| 2,502,283 | + | PS417_11630 | 0.40 | -0.2 | |
| 2,502,283 | + | PS417_11630 | 0.40 | -0.6 | |
| 2,502,283 | + | PS417_11630 | 0.40 | -0.2 | |
| 2,502,283 | + | PS417_11630 | 0.40 | -0.6 | |
| 2,502,284 | - | PS417_11630 | 0.40 | +0.5 | |
| 2,502,324 | + | PS417_11630 | 0.43 | +0.1 | |
| 2,502,348 | - | PS417_11630 | 0.45 | +0.0 | |
| 2,502,591 | + | PS417_11630 | 0.63 | -0.7 | |
| 2,502,591 | + | PS417_11630 | 0.63 | +1.8 | |
| 2,502,649 | + | PS417_11630 | 0.68 | +0.8 | |
| 2,502,649 | + | PS417_11630 | 0.68 | -0.1 | |
| 2,502,649 | + | PS417_11630 | 0.68 | -0.0 | |
| 2,502,817 | + | PS417_11630 | 0.81 | -1.0 | |
| 2,503,039 | + | +0.4 | |||
| 2,503,040 | - | +0.1 | |||
| 2,503,091 | + | -0.0 | |||
| 2,503,091 | + | -0.2 | |||
| 2,503,105 | + | +0.7 |
Or see this region's nucleotide sequence