Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00110 and PS417_00115 are separated by 130 nucleotides PS417_00115 and PS417_00120 are separated by 159 nucleotides
PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240
_00110
PS417_00115: PS417_00115 - quinone oxidoreductase, at 24,371 to 25,348
_00115
PS417_00120: PS417_00120 - coproporphyrinogen III oxidase, at 25,508 to 26,440
_00120
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.401 kb on - strand at 23.627 kb on - strand at 23.665 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.366 kb on + strand at 24.397 kb on + strand at 24.526 kb on + strand, within PS417_00115 at 24.526 kb on + strand, within PS417_00115 at 24.527 kb on - strand, within PS417_00115 at 24.527 kb on - strand, within PS417_00115 at 24.543 kb on + strand, within PS417_00115 at 24.570 kb on + strand, within PS417_00115 at 24.571 kb on - strand, within PS417_00115 at 24.709 kb on - strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.943 kb on - strand, within PS417_00115 at 24.943 kb on - strand, within PS417_00115 at 25.065 kb on + strand, within PS417_00115 at 25.212 kb on + strand, within PS417_00115 at 25.213 kb on - strand, within PS417_00115 at 25.247 kb on - strand, within PS417_00115 at 25.287 kb on + strand at 25.287 kb on + strand at 25.287 kb on + strand at 25.288 kb on - strand at 25.288 kb on - strand at 25.296 kb on + strand at 25.296 kb on + strand at 25.296 kb on + strand at 25.297 kb on - strand at 25.395 kb on + strand at 25.395 kb on + strand at 25.396 kb on - strand at 25.396 kb on - strand at 25.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 23,401 - -0.0 23,627 - -0.7 23,665 + -0.5 24,364 + -1.4 24,364 + -2.4 24,364 + -1.1 24,364 + -0.2 24,365 - -0.7 24,365 - -0.8 24,365 - -0.2 24,365 - -0.3 24,365 - +1.6 24,365 - -0.3 24,366 + -0.4 24,397 + -0.3 24,526 + PS417_00115 0.16 +0.9 24,526 + PS417_00115 0.16 +0.3 24,527 - PS417_00115 0.16 +1.6 24,527 - PS417_00115 0.16 +0.4 24,543 + PS417_00115 0.18 +1.5 24,570 + PS417_00115 0.20 +0.2 24,571 - PS417_00115 0.20 -0.1 24,709 - PS417_00115 0.35 +0.2 24,942 + PS417_00115 0.58 -1.5 24,942 + PS417_00115 0.58 +0.2 24,942 + PS417_00115 0.58 -0.3 24,943 - PS417_00115 0.58 +0.2 24,943 - PS417_00115 0.58 +0.5 25,065 + PS417_00115 0.71 +0.3 25,212 + PS417_00115 0.86 +1.4 25,213 - PS417_00115 0.86 -1.1 25,247 - PS417_00115 0.90 -0.6 25,287 + -0.5 25,287 + -0.4 25,287 + -0.1 25,288 - +0.5 25,288 - -1.1 25,296 + -0.3 25,296 + +1.3 25,296 + -0.4 25,297 - -0.2 25,395 + -1.3 25,395 + -0.6 25,396 - -2.0 25,396 - -1.1 25,438 + -0.6
Or see this region's nucleotide sequence