Strain Fitness in Pseudomonas simiae WCS417 around PS417_11215
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,403,729 | - | PS417_11205 | 0.58 | +0.4 | |
| 2,404,271 | + | PS417_11210 | 0.19 | -0.3 | |
| 2,404,931 | + | PS417_11215 | 0.36 | +0.9 | |
| 2,404,993 | + | PS417_11215 | 0.43 | -1.3 | |
| 2,405,065 | - | PS417_11215 | 0.52 | +0.4 | |
| 2,405,149 | - | PS417_11215 | 0.62 | +1.5 | |
| 2,405,251 | - | PS417_11215 | 0.75 | -0.5 | |
| 2,405,251 | - | PS417_11215 | 0.75 | -0.6 | |
| 2,405,422 | - | -2.6 | |||
| 2,405,422 | - | +0.4 | |||
| 2,405,497 | + | -0.0 | |||
| 2,405,526 | - | +3.9 | |||
| 2,405,578 | - | +0.2 | |||
| 2,405,625 | + | -0.0 | |||
| 2,405,671 | - | -0.0 | |||
| 2,405,671 | - | -1.0 | |||
| 2,405,755 | - | PS417_11220 | 0.15 | -0.7 | |
| 2,405,874 | + | PS417_11220 | 0.24 | +0.0 | |
| 2,406,013 | + | +0.5 | |||
| 2,406,016 | - | PS417_11220 | 0.34 | +0.2 | |
| 2,406,171 | + | PS417_11220 | 0.45 | -0.6 | |
| 2,406,192 | + | PS417_11220 | 0.46 | +1.4 | |
| 2,406,201 | + | PS417_11220 | 0.47 | -0.0 | |
| 2,406,201 | + | PS417_11220 | 0.47 | -0.6 |
Or see this region's nucleotide sequence