Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01085 and PS417_01090 are separated by 186 nucleotides PS417_01090 and PS417_01095 are separated by 371 nucleotides
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.758 kb on - strand, within PS417_01085 at 238.981 kb on - strand at 238.981 kb on - strand at 239.011 kb on - strand at 239.011 kb on - strand at 239.072 kb on - strand at 239.213 kb on + strand at 239.213 kb on + strand at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand at 239.991 kb on + strand at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 238,429 + +0.2 238,475 + PS417_01085 0.59 -1.9 238,475 + PS417_01085 0.59 -1.1 238,499 + PS417_01085 0.61 -0.3 238,499 + +0.9 238,499 + PS417_01085 0.61 -0.1 238,500 - PS417_01085 0.61 +0.1 238,500 - PS417_01085 0.61 -1.5 238,758 - PS417_01085 0.82 +0.2 238,981 - -0.8 238,981 - -0.6 239,011 - -0.5 239,011 - -2.8 239,072 - -0.3 239,213 + -0.6 239,213 + -0.4 239,318 + PS417_01090 0.19 +1.2 239,318 + PS417_01090 0.19 +1.2 239,318 + PS417_01090 0.19 +0.1 239,377 + PS417_01090 0.27 -0.1 239,378 - PS417_01090 0.27 +0.6 239,591 + PS417_01090 0.55 +0.2 239,592 - PS417_01090 0.55 +0.2 239,635 + PS417_01090 0.60 +0.0 239,636 - PS417_01090 0.61 -0.2 239,636 - PS417_01090 0.61 -0.1 239,636 - PS417_01090 0.61 +1.3 239,636 - PS417_01090 0.61 +3.8 239,687 + PS417_01090 0.67 +0.3 239,838 - PS417_01090 0.87 +1.6 239,938 - +1.5 239,941 + -0.7 239,941 + +0.5 239,942 - +0.7 239,991 + -2.7 240,061 + +0.4 240,062 - -0.1 240,062 - +0.4 240,176 + -1.1 240,202 - -0.8 240,245 - +0.1 240,263 + -0.6 240,282 + +2.2 240,567 + PS417_01095 0.35 -1.4 240,568 - PS417_01095 0.35 -0.8 240,568 - PS417_01095 0.35 -1.0
Or see this region's nucleotide sequence