Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09145 and PS417_09150 are separated by 24 nucleotides PS417_09150 and PS417_09155 are separated by 2 nucleotides PS417_09155 and PS417_09160 are separated by 190 nucleotides PS417_09160 and PS417_09165 overlap by 4 nucleotides
PS417_09145: PS417_09145 - TonB-dependent receptor, at 1,987,477 to 1,989,759
_09145
PS417_09150: PS417_09150 - energy transducer TonB, at 1,989,784 to 1,990,512
_09150
PS417_09155: PS417_09155 - biopolymer transporter ExbD, at 1,990,515 to 1,990,922
_09155
PS417_09160: PS417_09160 - GNAT family acetyltransferase, at 1,991,113 to 1,991,667
_09160
PS417_09165: PS417_09165 - alkaline phosphatase, at 1,991,664 to 1,993,238
_09165
Position (kb) 1990
1991 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1989.786 kb on - strand at 1989.797 kb on + strand at 1989.797 kb on + strand at 1990.037 kb on + strand, within PS417_09150 at 1990.038 kb on - strand, within PS417_09150 at 1990.038 kb on - strand, within PS417_09150 at 1990.102 kb on - strand at 1990.102 kb on - strand, within PS417_09150 at 1990.504 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.508 kb on + strand at 1990.509 kb on - strand at 1990.509 kb on - strand at 1990.523 kb on + strand at 1990.523 kb on + strand at 1990.830 kb on + strand, within PS417_09155 at 1990.990 kb on - strand at 1991.223 kb on + strand, within PS417_09160 at 1991.223 kb on + strand, within PS417_09160 at 1991.249 kb on - strand, within PS417_09160 at 1991.249 kb on - strand, within PS417_09160 at 1991.658 kb on - strand at 1991.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,989,786 - -0.1 1,989,797 + -0.3 1,989,797 + -0.4 1,990,037 + PS417_09150 0.35 -0.7 1,990,038 - PS417_09150 0.35 -0.7 1,990,038 - PS417_09150 0.35 +0.3 1,990,102 - +0.5 1,990,102 - PS417_09150 0.44 -0.1 1,990,504 + +0.4 1,990,508 + +0.7 1,990,508 + +0.7 1,990,508 + +5.0 1,990,508 + -1.4 1,990,509 - -1.3 1,990,509 - -0.3 1,990,523 + -0.3 1,990,523 + -1.0 1,990,830 + PS417_09155 0.77 +0.1 1,990,990 - -0.9 1,991,223 + PS417_09160 0.20 -0.4 1,991,223 + PS417_09160 0.20 -1.3 1,991,249 - PS417_09160 0.25 -2.6 1,991,249 - PS417_09160 0.25 -0.9 1,991,658 - +0.1 1,991,769 + +0.3
Or see this region's nucleotide sequence