Strain Fitness in Pseudomonas simiae WCS417 around PS417_00695

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00690 and PS417_00695 are separated by 168 nucleotidesPS417_00695 and PS417_00700 are separated by 33 nucleotidesPS417_00700 and PS417_00705 are separated by 237 nucleotidesPS417_00705 and PS417_00710 overlap by 4 nucleotides PS417_00690: PS417_00690 - hypothetical protein, at 142,655 to 144,823 _00690 PS417_00695: PS417_00695 - membrane protein, at 144,992 to 146,596 _00695 PS417_00700: PS417_00700 - hypothetical protein, at 146,630 to 146,875 _00700 PS417_00705: PS417_00705 - MarR family transcriptional regulator, at 147,113 to 147,523 _00705 PS417_00710: PS417_00710 - fusaric acid resistance protein, at 147,520 to 149,598 _00710 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 144.079 kb on + strand, within PS417_00690at 144.079 kb on + strand, within PS417_00690at 144.079 kb on + strand, within PS417_00690at 144.080 kb on - strand, within PS417_00690at 144.080 kb on - strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.093 kb on + strand, within PS417_00690at 144.094 kb on - strand, within PS417_00690at 144.094 kb on - strand, within PS417_00690at 144.201 kb on + strand, within PS417_00690at 144.201 kb on + strand, within PS417_00690at 144.202 kb on - strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.205 kb on + strand, within PS417_00690at 144.461 kb on + strand, within PS417_00690at 144.861 kb on + strandat 144.861 kb on + strandat 144.862 kb on - strandat 144.862 kb on - strandat 144.864 kb on + strandat 144.864 kb on + strandat 144.864 kb on + strandat 144.882 kb on - strandat 145.009 kb on - strandat 145.045 kb on + strandat 145.131 kb on - strandat 145.131 kb on - strandat 145.191 kb on - strand, within PS417_00695at 145.191 kb on - strand, within PS417_00695at 145.191 kb on - strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.451 kb on + strand, within PS417_00695at 145.452 kb on - strand, within PS417_00695at 145.452 kb on - strand, within PS417_00695at 145.529 kb on + strand, within PS417_00695at 145.541 kb on + strand, within PS417_00695at 145.568 kb on + strand, within PS417_00695at 145.568 kb on + strand, within PS417_00695at 145.569 kb on - strand, within PS417_00695at 145.577 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.706 kb on + strand, within PS417_00695at 145.707 kb on - strand, within PS417_00695at 146.031 kb on - strand, within PS417_00695at 146.040 kb on + strand, within PS417_00695at 146.040 kb on + strand, within PS417_00695at 146.041 kb on - strand, within PS417_00695at 146.042 kb on + strand, within PS417_00695at 146.267 kb on + strand, within PS417_00695at 146.268 kb on - strand, within PS417_00695at 146.276 kb on + strand, within PS417_00695at 146.277 kb on - strand, within PS417_00695at 146.277 kb on - strand, within PS417_00695at 146.282 kb on + strand, within PS417_00695at 146.285 kb on + strand, within PS417_00695at 146.285 kb on + strand, within PS417_00695at 146.315 kb on + strand, within PS417_00695at 146.316 kb on - strand, within PS417_00695at 146.316 kb on - strand, within PS417_00695at 146.360 kb on + strand, within PS417_00695at 146.360 kb on + strand, within PS417_00695at 146.398 kb on + strand, within PS417_00695at 146.398 kb on + strand, within PS417_00695at 146.399 kb on - strand, within PS417_00695at 146.399 kb on - strand, within PS417_00695at 146.399 kb on - strand, within PS417_00695at 146.402 kb on + strand, within PS417_00695at 146.594 kb on + strandat 146.647 kb on + strandat 146.647 kb on + strandat 146.647 kb on + strandat 146.648 kb on - strandat 146.648 kb on - strandat 146.964 kb on - strandat 146.976 kb on - strandat 146.976 kb on - strandat 147.053 kb on + strandat 147.072 kb on - strandat 147.148 kb on + strandat 147.186 kb on - strand, within PS417_00705at 147.329 kb on + strand, within PS417_00705at 147.330 kb on - strand, within PS417_00705at 147.565 kb on + strandat 147.566 kb on - strandat 147.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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144,079 + PS417_00690 0.66 +0.0
144,079 + PS417_00690 0.66 -1.0
144,079 + PS417_00690 0.66 +0.1
144,080 - PS417_00690 0.66 -1.8
144,080 - PS417_00690 0.66 +0.2
144,093 + PS417_00690 0.66 -1.2
144,093 + PS417_00690 0.66 -0.3
144,093 + PS417_00690 0.66 +0.0
144,093 + PS417_00690 0.66 -0.4
144,094 - PS417_00690 0.66 -0.1
144,094 - PS417_00690 0.66 +0.3
144,201 + PS417_00690 0.71 -0.1
144,201 + PS417_00690 0.71 -2.8
144,202 - PS417_00690 0.71 +0.5
144,205 + PS417_00690 0.71 +0.2
144,205 + PS417_00690 0.71 +1.1
144,205 + PS417_00690 0.71 -0.6
144,205 + PS417_00690 0.71 +0.0
144,205 + PS417_00690 0.71 +1.1
144,205 + PS417_00690 0.71 +0.3
144,205 + PS417_00690 0.71 -0.3
144,461 + PS417_00690 0.83 +1.0
144,861 + -0.3
144,861 + +0.3
144,862 - -0.7
144,862 - +0.7
144,864 + -1.6
144,864 + +0.2
144,864 + +0.1
144,882 - -0.5
145,009 - -0.7
145,045 + -0.3
145,131 - +1.2
145,131 - +0.5
145,191 - PS417_00695 0.12 +1.1
145,191 - PS417_00695 0.12 -0.5
145,191 - PS417_00695 0.12 +1.2
145,451 + PS417_00695 0.29 -0.3
145,451 + PS417_00695 0.29 -2.8
145,451 + PS417_00695 0.29 -0.8
145,452 - PS417_00695 0.29 +0.2
145,452 - PS417_00695 0.29 +3.6
145,529 + PS417_00695 0.33 -1.3
145,541 + PS417_00695 0.34 -0.6
145,568 + PS417_00695 0.36 +1.2
145,568 + PS417_00695 0.36 -1.6
145,569 - PS417_00695 0.36 +0.4
145,577 + PS417_00695 0.36 +0.1
145,706 + PS417_00695 0.44 -0.8
145,706 + PS417_00695 0.44 +0.5
145,706 + PS417_00695 0.44 -0.3
145,706 + PS417_00695 0.44 -0.9
145,707 - PS417_00695 0.45 -0.8
146,031 - PS417_00695 0.65 +0.4
146,040 + PS417_00695 0.65 +0.2
146,040 + PS417_00695 0.65 +0.3
146,041 - PS417_00695 0.65 -2.8
146,042 + PS417_00695 0.65 -0.0
146,267 + PS417_00695 0.79 -0.4
146,268 - PS417_00695 0.80 -2.5
146,276 + PS417_00695 0.80 +0.5
146,277 - PS417_00695 0.80 -0.5
146,277 - PS417_00695 0.80 -1.1
146,282 + PS417_00695 0.80 -0.4
146,285 + PS417_00695 0.81 +0.6
146,285 + PS417_00695 0.81 -0.1
146,315 + PS417_00695 0.82 +0.5
146,316 - PS417_00695 0.82 -0.3
146,316 - PS417_00695 0.82 +0.4
146,360 + PS417_00695 0.85 -0.7
146,360 + PS417_00695 0.85 -1.9
146,398 + PS417_00695 0.88 +1.3
146,398 + PS417_00695 0.88 +3.0
146,399 - PS417_00695 0.88 +2.9
146,399 - PS417_00695 0.88 -0.8
146,399 - PS417_00695 0.88 -1.0
146,402 + PS417_00695 0.88 -1.1
146,594 + +0.0
146,647 + -1.5
146,647 + +0.6
146,647 + -0.3
146,648 - +0.8
146,648 - -0.9
146,964 - -0.6
146,976 - -0.8
146,976 - -0.1
147,053 + +0.2
147,072 - +1.2
147,148 + -0.5
147,186 - PS417_00705 0.18 +0.3
147,329 + PS417_00705 0.53 -0.0
147,330 - PS417_00705 0.53 +0.9
147,565 + +3.2
147,566 - +0.3
147,566 - +1.8

Or see this region's nucleotide sequence