Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00680 and PS417_00685 are separated by 130 nucleotides PS417_00685 and PS417_00690 overlap by 4 nucleotides
PS417_00680: PS417_00680 - TonB-dependent receptor, at 139,370 to 141,823
_00680
PS417_00685: PS417_00685 - hypothetical protein, at 141,954 to 142,658
_00685
PS417_00690: PS417_00690 - hypothetical protein, at 142,655 to 144,823
_00690
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 140.966 kb on + strand, within PS417_00680 at 140.966 kb on + strand, within PS417_00680 at 140.992 kb on + strand, within PS417_00680 at 141.113 kb on + strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.243 kb on - strand, within PS417_00680 at 141.340 kb on + strand, within PS417_00680 at 141.446 kb on + strand, within PS417_00680 at 141.447 kb on - strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.608 kb on + strand at 141.608 kb on + strand at 141.609 kb on - strand at 141.609 kb on - strand at 141.635 kb on + strand at 141.636 kb on - strand at 141.740 kb on + strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.773 kb on + strand at 141.773 kb on + strand at 141.774 kb on - strand at 141.776 kb on + strand at 141.813 kb on - strand at 141.821 kb on + strand at 141.839 kb on - strand at 141.980 kb on - strand at 142.006 kb on - strand at 142.006 kb on - strand at 142.009 kb on + strand at 142.087 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.124 kb on - strand, within PS417_00685 at 142.373 kb on - strand, within PS417_00685 at 142.522 kb on + strand at 142.522 kb on + strand, within PS417_00685 at 142.589 kb on - strand at 142.662 kb on + strand at 142.665 kb on + strand at 142.666 kb on - strand at 142.666 kb on - strand at 142.770 kb on + strand at 142.770 kb on + strand at 142.770 kb on + strand at 143.124 kb on + strand, within PS417_00690 at 143.124 kb on + strand, within PS417_00690 at 143.125 kb on - strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.326 kb on - strand, within PS417_00690 at 143.394 kb on + strand, within PS417_00690 at 143.395 kb on - strand, within PS417_00690 at 143.544 kb on + strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.610 kb on + strand at 143.611 kb on - strand, within PS417_00690 at 143.640 kb on + strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 140,966 + PS417_00680 0.65 -0.1 140,966 + PS417_00680 0.65 -1.1 140,992 + PS417_00680 0.66 -0.6 141,113 + PS417_00680 0.71 +0.6 141,114 - PS417_00680 0.71 -0.9 141,114 - PS417_00680 0.71 +0.1 141,243 - PS417_00680 0.76 -3.1 141,340 + PS417_00680 0.80 -2.0 141,446 + PS417_00680 0.85 +0.3 141,447 - PS417_00680 0.85 -0.4 141,524 + PS417_00680 0.88 +0.0 141,524 + PS417_00680 0.88 -0.6 141,608 + -0.4 141,608 + -0.3 141,609 - +0.8 141,609 - +0.9 141,635 + +0.4 141,636 - +0.2 141,740 + +0.3 141,741 - +0.1 141,741 - +0.3 141,741 - -2.3 141,773 + -1.5 141,773 + -0.3 141,774 - +0.7 141,776 + -1.2 141,813 - +1.2 141,821 + -0.6 141,839 - +0.1 141,980 - +0.7 142,006 - -1.3 142,006 - -0.3 142,009 + -0.9 142,087 + PS417_00685 0.19 +0.6 142,123 + PS417_00685 0.24 +0.2 142,123 + PS417_00685 0.24 -0.0 142,123 + PS417_00685 0.24 +0.1 142,124 - PS417_00685 0.24 +4.2 142,373 - PS417_00685 0.59 +1.6 142,522 + +0.9 142,522 + PS417_00685 0.81 +5.9 142,589 - -0.3 142,662 + -1.6 142,665 + +0.2 142,666 - -0.6 142,666 - -1.7 142,770 + -0.9 142,770 + -0.6 142,770 + +0.1 143,124 + PS417_00690 0.22 -0.0 143,124 + PS417_00690 0.22 -0.1 143,125 - PS417_00690 0.22 -1.1 143,325 + PS417_00690 0.31 +0.3 143,325 + PS417_00690 0.31 -0.5 143,325 + PS417_00690 0.31 +2.3 143,326 - PS417_00690 0.31 +0.9 143,394 + PS417_00690 0.34 -0.9 143,395 - PS417_00690 0.34 -0.5 143,544 + PS417_00690 0.41 +0.9 143,545 - PS417_00690 0.41 +0.1 143,545 - PS417_00690 0.41 -1.4 143,610 + +0.9 143,611 - PS417_00690 0.44 -0.1 143,640 + PS417_00690 0.45 +0.3 143,641 - PS417_00690 0.45 -0.2 143,641 - PS417_00690 0.45 -0.0
Or see this region's nucleotide sequence