Strain Fitness in Pseudomonas simiae WCS417 around PS417_06320
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 1,403,767 | + | -2.0 | |||
| 1,403,767 | + | +1.1 | |||
| 1,403,874 | + | -1.7 | |||
| 1,405,127 | - | +0.9 | |||
| 1,405,184 | + | PS417_06325 | 0.10 | -0.9 | |
| 1,405,268 | + | PS417_06325 | 0.20 | -1.0 | |
| 1,405,269 | - | PS417_06325 | 0.20 | +0.9 | |
| 1,405,269 | - | PS417_06325 | 0.20 | -0.4 | |
| 1,405,269 | - | PS417_06325 | 0.20 | -1.1 | |
| 1,405,271 | + | PS417_06325 | 0.20 | -0.4 | |
| 1,405,271 | + | PS417_06325 | 0.20 | +0.4 | |
| 1,405,272 | - | PS417_06325 | 0.20 | -0.7 | |
| 1,405,422 | + | PS417_06325 | 0.37 | +0.5 | |
| 1,405,423 | - | PS417_06325 | 0.37 | +0.1 | |
| 1,405,423 | - | PS417_06325 | 0.37 | -0.7 | |
| 1,405,446 | + | PS417_06325 | 0.39 | -2.1 | |
| 1,405,446 | + | PS417_06325 | 0.39 | +0.4 | |
| 1,405,447 | - | PS417_06325 | 0.39 | -0.5 | |
| 1,405,472 | + | PS417_06325 | 0.42 | -0.2 | |
| 1,405,493 | + | PS417_06325 | 0.45 | -0.1 | |
| 1,405,494 | - | PS417_06325 | 0.45 | -0.6 | |
| 1,405,494 | - | PS417_06325 | 0.45 | +0.1 | |
| 1,405,494 | - | PS417_06325 | 0.45 | -0.3 |
Or see this region's nucleotide sequence