Strain Fitness in Pseudomonas simiae WCS417 around PS417_06155
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 1,362,536 | + | +0.2 | |||
| 1,362,541 | - | -0.9 | |||
| 1,362,768 | + | PS417_06150 | 0.28 | -0.7 | |
| 1,362,769 | - | PS417_06150 | 0.28 | +0.7 | |
| 1,363,012 | + | PS417_06150 | 0.58 | +1.3 | |
| 1,363,069 | - | PS417_06150 | 0.65 | -0.4 | |
| 1,363,251 | + | PS417_06150 | 0.88 | -0.4 | |
| 1,364,522 | - | -1.1 | |||
| 1,364,705 | + | -0.1 | |||
| 1,364,708 | - | +0.9 | |||
| 1,364,736 | + | +0.0 | |||
| 1,364,907 | - | -0.0 | |||
| 1,365,045 | - | PS417_06160 | 0.11 | -0.4 | |
| 1,365,276 | + | PS417_06160 | 0.20 | -0.9 | |
| 1,365,277 | - | PS417_06160 | 0.20 | +0.1 | |
| 1,365,277 | - | PS417_06160 | 0.20 | -0.8 | |
| 1,365,404 | + | PS417_06160 | 0.25 | +0.6 | |
| 1,365,479 | + | PS417_06160 | 0.28 | -0.9 | |
| 1,365,480 | - | PS417_06160 | 0.28 | +1.6 | |
| 1,365,482 | + | PS417_06160 | 0.28 | +0.5 | |
| 1,365,482 | + | PS417_06160 | 0.28 | -0.7 | |
| 1,365,483 | - | PS417_06160 | 0.28 | -1.9 |
Or see this region's nucleotide sequence