Strain Fitness in Pseudomonas simiae WCS417 around PS417_05440

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,221,595	+		PS417_05435	0.64	+0.6
1,221,599	+		PS417_05435	0.64	-0.1
1,221,600	-		PS417_05435	0.64	-1.0
1,221,638	+		PS417_05435	0.66	-1.0
1,221,700	-		PS417_05435	0.69	-2.2
1,222,243	+				+1.1
1,222,353	-				+0.4
1,222,526	+				+0.4
1,222,527	-				+0.1
1,222,571	+				+0.6
1,222,595	+				+0.2
1,222,595	+				+0.4
1,222,596	-				+0.5
1,222,674	+		PS417_05440	0.14	-1.3
1,222,675	-		PS417_05440	0.14	-0.8
1,222,724	-		PS417_05440	0.18	-0.1
1,222,810	+		PS417_05440	0.24	-2.2
1,222,811	-		PS417_05440	0.25	-1.1
1,223,020	+		PS417_05440	0.41	-0.8
1,223,021	-		PS417_05440	0.41	+0.5
1,223,021	-		PS417_05440	0.41	+1.9
1,223,021	-		PS417_05440	0.41	-0.1
1,223,021	-		PS417_05440	0.41	-1.4
1,223,021	-		PS417_05440	0.41	-0.1
1,223,116	+		PS417_05440	0.48	-0.6
1,223,117	-				+0.6
1,223,233	-		PS417_05440	0.57	-0.2
1,223,497	+		PS417_05440	0.77	+0.1
1,223,498	-		PS417_05440	0.77	-1.2
1,223,498	-		PS417_05440	0.77	+0.0
1,223,498	-		PS417_05440	0.77	-0.5
1,223,525	-		PS417_05440	0.79	-0.0
1,223,758	+				+0.2
1,223,759	-				-0.2
1,223,759	-				+1.5
1,223,765	+				+0.4
1,223,765	+				+0.9
1,223,765	+				+0.6
1,223,765	+				-0.6
1,223,765	+				-1.5
1,223,766	-				-1.3
1,223,766	-				-0.1
1,223,766	-				-0.4
1,223,769	+				+0.2
1,223,769	+				-0.0
1,223,833	+				-0.3
1,223,833	+				+1.2
1,224,035	-		PS417_05445	0.48	-1.3
1,224,456	+		PS417_05450	0.42	-0.0
1,224,504	+				+1.2
1,224,505	-		PS417_05450	0.51	+0.2
1,224,505	-		PS417_05450	0.51	-0.8
1,224,505	-		PS417_05450	0.51	-0.2
1,224,505	-		PS417_05450	0.51	-0.2
1,224,505	-		PS417_05450	0.51	-0.6
1,224,505	-		PS417_05450	0.51	-0.2
1,224,520	-		PS417_05450	0.54	-1.6
1,224,642	+		PS417_05450	0.78	+0.6
1,224,642	+		PS417_05450	0.78	-1.0
1,224,643	-		PS417_05450	0.78	-0.2
1,224,705	+				-0.7