Strain Fitness in Pseudomonas simiae WCS417 around PS417_05345

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05335 and PS417_05340 are separated by 21 nucleotidesPS417_05340 and PS417_05345 are separated by 10 nucleotidesPS417_05345 and PS417_05350 are separated by 13 nucleotidesPS417_05350 and PS417_05355 are separated by 11 nucleotides PS417_05335: PS417_05335 - molecular chaperone, at 1,186,239 to 1,187,000 _05335 PS417_05340: PS417_05340 - fimbrial protein, at 1,187,022 to 1,187,594 _05340 PS417_05345: PS417_05345 - exotoxin, at 1,187,605 to 1,188,099 _05345 PS417_05350: PS417_05350 - pilus assembly protein, at 1,188,113 to 1,188,592 _05350 PS417_05355: PS417_05355 - exotoxin, at 1,188,604 to 1,189,152 _05355 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1186.644 kb on - strand, within PS417_05335at 1186.751 kb on + strand, within PS417_05335at 1186.758 kb on - strand, within PS417_05335at 1186.764 kb on + strand, within PS417_05335at 1186.764 kb on + strandat 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.765 kb on - strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.767 kb on + strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.768 kb on - strand, within PS417_05335at 1186.879 kb on + strand, within PS417_05335at 1186.880 kb on - strand, within PS417_05335at 1186.906 kb on - strand, within PS417_05335at 1186.956 kb on - strandat 1186.999 kb on - strandat 1186.999 kb on - strandat 1187.748 kb on + strand, within PS417_05345at 1187.807 kb on - strand, within PS417_05345at 1187.824 kb on + strand, within PS417_05345at 1187.825 kb on - strand, within PS417_05345at 1188.297 kb on - strand, within PS417_05350at 1188.466 kb on + strand, within PS417_05350at 1188.574 kb on - strandat 1188.584 kb on + strandat 1188.625 kb on - strandat 1188.735 kb on + strand, within PS417_05355at 1188.799 kb on + strand, within PS417_05355at 1188.799 kb on + strand, within PS417_05355at 1188.799 kb on + strand, within PS417_05355at 1188.800 kb on - strand, within PS417_05355at 1188.800 kb on - strand, within PS417_05355at 1188.800 kb on - strandat 1188.801 kb on + strand, within PS417_05355at 1188.802 kb on - strand, within PS417_05355at 1188.954 kb on + strand, within PS417_05355at 1189.030 kb on - strand, within PS417_05355at 1189.060 kb on + strand, within PS417_05355at 1189.060 kb on + strand, within PS417_05355at 1189.060 kb on + strand, within PS417_05355at 1189.060 kb on + strand, within PS417_05355at 1189.061 kb on - strand, within PS417_05355at 1189.061 kb on - strand, within PS417_05355

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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1,186,644 - PS417_05335 0.53 +0.5
1,186,751 + PS417_05335 0.67 -0.2
1,186,758 - PS417_05335 0.68 -0.7
1,186,764 + PS417_05335 0.69 -3.0
1,186,764 + +0.2
1,186,765 - PS417_05335 0.69 -0.7
1,186,765 - PS417_05335 0.69 +0.5
1,186,765 - PS417_05335 0.69 -1.8
1,186,765 - PS417_05335 0.69 +1.4
1,186,767 + PS417_05335 0.69 -0.2
1,186,767 + PS417_05335 0.69 -0.5
1,186,768 - PS417_05335 0.69 +0.1
1,186,768 - PS417_05335 0.69 -0.3
1,186,768 - PS417_05335 0.69 -0.5
1,186,879 + PS417_05335 0.84 -1.4
1,186,880 - PS417_05335 0.84 -0.4
1,186,906 - PS417_05335 0.88 -0.5
1,186,956 - +0.4
1,186,999 - +0.2
1,186,999 - +0.2
1,187,748 + PS417_05345 0.29 +1.0
1,187,807 - PS417_05345 0.41 -1.2
1,187,824 + PS417_05345 0.44 -1.6
1,187,825 - PS417_05345 0.44 +0.1
1,188,297 - PS417_05350 0.38 -0.1
1,188,466 + PS417_05350 0.74 -1.1
1,188,574 - +0.3
1,188,584 + -0.3
1,188,625 - +0.1
1,188,735 + PS417_05355 0.24 +0.5
1,188,799 + PS417_05355 0.36 +0.7
1,188,799 + PS417_05355 0.36 -0.7
1,188,799 + PS417_05355 0.36 -0.1
1,188,800 - PS417_05355 0.36 +1.8
1,188,800 - PS417_05355 0.36 -0.2
1,188,800 - +0.1
1,188,801 + PS417_05355 0.36 -0.2
1,188,802 - PS417_05355 0.36 +0.1
1,188,954 + PS417_05355 0.64 +1.6
1,189,030 - PS417_05355 0.78 +2.2
1,189,060 + PS417_05355 0.83 -0.6
1,189,060 + PS417_05355 0.83 +2.6
1,189,060 + PS417_05355 0.83 -1.5
1,189,060 + PS417_05355 0.83 -0.1
1,189,061 - PS417_05355 0.83 +0.4
1,189,061 - PS417_05355 0.83 +1.4

Or see this region's nucleotide sequence