Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04305 and PS417_04310 are separated by 27 nucleotides PS417_04310 and PS417_04315 are separated by 1 nucleotides PS417_04315 and PS417_04320 are separated by 33 nucleotides
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423
_04310
PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036
_04315
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.965 kb on + strand at 967.039 kb on + strand, within PS417_04310 at 967.039 kb on + strand, within PS417_04310 at 967.040 kb on - strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.074 kb on - strand, within PS417_04310 at 967.424 kb on + strand at 967.425 kb on - strand at 967.431 kb on + strand at 967.431 kb on + strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.433 kb on + strand at 967.433 kb on + strand at 967.458 kb on + strand at 967.478 kb on + strand at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.935 kb on + strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.945 kb on - strand, within PS417_04315 at 967.966 kb on - strand, within PS417_04315 at 967.980 kb on + strand at 967.981 kb on - strand at 967.988 kb on + strand at 968.017 kb on - strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.138 kb on - strand at 968.148 kb on - strand at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 966,965 + +1.4 967,039 + PS417_04310 0.10 +0.6 967,039 + PS417_04310 0.10 +0.6 967,040 - PS417_04310 0.10 +0.6 967,073 + PS417_04310 0.18 +0.3 967,073 + PS417_04310 0.18 +2.0 967,074 - PS417_04310 0.18 +0.3 967,424 + -1.4 967,425 - -1.4 967,431 + +0.2 967,431 + -1.0 967,432 - -1.9 967,432 - -1.3 967,432 - +0.1 967,433 + -1.1 967,433 + -1.3 967,458 + -3.0 967,478 + -1.1 967,507 - PS417_04315 0.13 -1.2 967,507 - PS417_04315 0.13 -2.6 967,507 - PS417_04315 0.13 +0.1 967,527 + PS417_04315 0.17 +0.3 967,527 + PS417_04315 0.17 -0.6 967,935 + PS417_04315 0.83 -1.3 967,936 - PS417_04315 0.83 -0.7 967,936 - PS417_04315 0.83 -2.1 967,945 - PS417_04315 0.85 -0.7 967,966 - PS417_04315 0.88 -2.2 967,980 + -0.9 967,981 - -0.0 967,988 + +0.0 968,017 - -2.3 968,059 + -0.9 968,059 + +1.0 968,059 + +0.4 968,059 + -0.9 968,138 - -1.2 968,148 - +0.8 968,432 + PS417_04320 0.40 -0.0 968,432 + +0.6 968,432 + PS417_04320 0.40 -0.2 968,433 - PS417_04320 0.41 +0.1 968,454 + PS417_04320 0.43 -0.8 968,534 + PS417_04320 0.52 -0.5 968,961 + +0.0 968,979 - -0.3 968,979 - +0.6
Or see this region's nucleotide sequence