Strain Fitness in Pseudomonas simiae WCS417 around PS417_04285

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04275 and PS417_04280 are separated by 48 nucleotidesPS417_04280 and PS417_04285 are separated by 16 nucleotidesPS417_04285 and PS417_04290 are separated by 45 nucleotidesPS417_04290 and PS417_04295 are separated by 108 nucleotides PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674 _04275 PS417_04280: PS417_04280 - carbon-nitrogen hydrolase, at 960,723 to 961,571 _04280 PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030 _04285 PS417_04290: PS417_04290 - hypothetical protein, at 963,076 to 963,597 _04290 PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052 _04295 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.688 kb on - strandat 960.833 kb on - strand, within PS417_04280at 960.953 kb on - strand, within PS417_04280at 960.953 kb on - strand, within PS417_04280at 961.129 kb on - strand, within PS417_04280at 961.195 kb on - strand, within PS417_04280at 961.195 kb on - strand, within PS417_04280at 961.339 kb on - strand, within PS417_04280at 961.339 kb on - strand, within PS417_04280at 961.390 kb on - strand, within PS417_04280at 961.575 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.584 kb on - strandat 961.584 kb on - strandat 961.584 kb on - strandat 961.587 kb on + strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.709 kb on - strandat 961.709 kb on - strandat 961.831 kb on + strand, within PS417_04285at 961.951 kb on + strand, within PS417_04285at 961.952 kb on - strand, within PS417_04285at 962.228 kb on - strand, within PS417_04285at 962.422 kb on + strand, within PS417_04285at 962.575 kb on + strand, within PS417_04285at 962.575 kb on + strand, within PS417_04285at 962.576 kb on - strand, within PS417_04285at 962.644 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.680 kb on + strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.681 kb on - strand, within PS417_04285at 962.740 kb on + strand, within PS417_04285at 962.741 kb on - strand, within PS417_04285at 962.813 kb on - strand, within PS417_04285at 962.938 kb on - strandat 962.938 kb on - strandat 963.029 kb on - strandat 963.116 kb on + strandat 963.116 kb on + strandat 963.129 kb on + strand, within PS417_04290at 963.154 kb on - strand, within PS417_04290at 963.288 kb on + strand, within PS417_04290at 963.402 kb on + strand, within PS417_04290at 963.501 kb on + strand, within PS417_04290at 963.502 kb on - strand, within PS417_04290at 963.585 kb on - strandat 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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960,606 + -1.6
960,606 + -1.7
960,606 + +0.8
960,606 + +0.3
960,606 + +0.8
960,606 + -2.2
960,607 - -3.6
960,607 - -2.8
960,607 - -1.6
960,607 - -1.1
960,607 - -1.2
960,687 + -0.4
960,687 + -0.9
960,687 + -0.0
960,687 + -0.7
960,688 - +0.2
960,833 - PS417_04280 0.13 -0.4
960,953 - PS417_04280 0.27 -1.1
960,953 - PS417_04280 0.27 +0.1
961,129 - PS417_04280 0.48 +0.4
961,195 - PS417_04280 0.56 -0.2
961,195 - PS417_04280 0.56 -0.1
961,339 - PS417_04280 0.73 +0.4
961,339 - PS417_04280 0.73 +0.7
961,390 - PS417_04280 0.79 -0.1
961,575 + -0.0
961,583 + -0.6
961,583 + +1.0
961,583 + +0.4
961,583 + +0.9
961,583 + +0.2
961,584 - +0.8
961,584 - +3.5
961,584 - +3.6
961,587 + +0.5
961,588 - -0.5
961,588 - +0.6
961,588 - +0.6
961,588 - +0.8
961,588 - +1.2
961,588 - +0.3
961,709 - +1.6
961,709 - +0.5
961,831 + PS417_04285 0.17 +0.8
961,951 + PS417_04285 0.25 +0.4
961,952 - PS417_04285 0.25 +1.4
962,228 - PS417_04285 0.44 +0.7
962,422 + PS417_04285 0.58 +0.9
962,575 + PS417_04285 0.68 -0.0
962,575 + PS417_04285 0.68 +0.5
962,576 - PS417_04285 0.68 +0.9
962,644 + PS417_04285 0.73 -1.2
962,680 + PS417_04285 0.76 +0.4
962,680 + PS417_04285 0.76 +0.3
962,680 + PS417_04285 0.76 +1.2
962,681 - PS417_04285 0.76 +1.1
962,681 - PS417_04285 0.76 +0.8
962,681 - PS417_04285 0.76 +0.8
962,681 - PS417_04285 0.76 +0.1
962,681 - PS417_04285 0.76 +1.1
962,681 - PS417_04285 0.76 +1.3
962,740 + PS417_04285 0.80 +0.8
962,741 - PS417_04285 0.80 +1.3
962,813 - PS417_04285 0.85 +0.3
962,938 - +0.1
962,938 - -1.0
963,029 - -0.7
963,116 + +0.9
963,116 + +0.3
963,129 + PS417_04290 0.10 +1.9
963,154 - PS417_04290 0.15 -0.9
963,288 + PS417_04290 0.41 +0.4
963,402 + PS417_04290 0.62 -0.3
963,501 + PS417_04290 0.81 -0.5
963,502 - PS417_04290 0.82 +0.4
963,585 - -1.2
963,910 + PS417_04295 0.15 +0.6
963,910 + PS417_04295 0.15 +3.2
963,910 + PS417_04295 0.15 +0.8
963,910 + PS417_04295 0.15 -0.1
963,911 - PS417_04295 0.15 -1.4
963,911 - PS417_04295 0.15 +0.3

Or see this region's nucleotide sequence