Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04105 and PS417_04110 are separated by 188 nucleotides PS417_04110 and PS417_04115 are separated by 141 nucleotides PS417_04115 and PS417_04120 are separated by 24 nucleotides
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146
_04110
PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923
_04115
PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303
_04120
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 923.886 kb on + strand, within PS417_04105 at 923.969 kb on - strand, within PS417_04105 at 923.999 kb on + strand, within PS417_04105 at 924.194 kb on + strand, within PS417_04105 at 924.195 kb on - strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.390 kb on - strand at 924.561 kb on + strand at 924.568 kb on + strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.710 kb on + strand at 924.726 kb on - strand at 925.203 kb on - strand at 925.203 kb on - strand at 925.245 kb on - strand at 925.426 kb on - strand, within PS417_04115 at 925.426 kb on - strand, within PS417_04115 at 925.433 kb on + strand, within PS417_04115 at 925.474 kb on - strand, within PS417_04115 at 925.524 kb on + strand, within PS417_04115 at 925.801 kb on + strand, within PS417_04115 at 925.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 923,886 + PS417_04105 0.63 -2.8 923,969 - PS417_04105 0.68 -2.5 923,999 + PS417_04105 0.70 -1.1 924,194 + PS417_04105 0.81 +0.8 924,195 - PS417_04105 0.81 -0.3 924,338 + PS417_04105 0.89 -2.5 924,338 + PS417_04105 0.89 -0.4 924,338 + PS417_04105 0.89 -1.3 924,339 - PS417_04105 0.89 -2.4 924,339 - PS417_04105 0.89 -1.5 924,339 - PS417_04105 0.89 -3.2 924,339 - PS417_04105 0.89 -1.4 924,339 - PS417_04105 0.89 -1.8 924,339 - PS417_04105 0.89 -0.4 924,339 - PS417_04105 0.89 -1.3 924,339 - PS417_04105 0.89 -1.9 924,390 - -0.9 924,561 + -0.3 924,568 + -0.4 924,568 + -0.6 924,569 - +0.0 924,710 + +1.7 924,726 - -0.7 925,203 - +0.4 925,203 - -0.7 925,245 - +0.3 925,426 - PS417_04115 0.22 -1.5 925,426 - PS417_04115 0.22 -0.2 925,433 + PS417_04115 0.23 -0.5 925,474 - PS417_04115 0.29 +0.2 925,524 + PS417_04115 0.37 +0.6 925,801 + PS417_04115 0.81 +1.7 925,935 + +0.4
Or see this region's nucleotide sequence