Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03365 and PS417_03370 are separated by 344 nucleotides PS417_03370 and PS417_03375 are separated by 225 nucleotides PS417_03375 and PS417_03380 are separated by 38 nucleotides
PS417_03365: PS417_03365 - transcriptional regulator, at 774,172 to 774,846
_03365
PS417_03370: PS417_03370 - porin, at 775,191 to 776,510
_03370
PS417_03375: PS417_03375 - hypothetical protein, at 776,736 to 777,068
_03375
PS417_03380: PS417_03380 - hypothetical protein, at 777,107 to 777,544
_03380
Position (kb) 775
776
777 Strain fitness (log2 ratio) -2
-1
0
1
2 at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.558 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.774 kb on - strand, within PS417_03365 at 774.803 kb on + strand at 774.840 kb on + strand at 774.854 kb on + strand at 774.855 kb on - strand at 774.855 kb on - strand at 774.909 kb on - strand at 775.043 kb on + strand at 775.122 kb on + strand at 775.123 kb on - strand at 775.157 kb on + strand at 775.158 kb on - strand at 775.178 kb on + strand at 775.178 kb on + strand at 775.178 kb on + strand at 775.321 kb on + strand at 775.321 kb on + strand at 775.322 kb on - strand at 775.393 kb on + strand, within PS417_03370 at 775.393 kb on + strand, within PS417_03370 at 775.394 kb on - strand, within PS417_03370 at 775.414 kb on + strand, within PS417_03370 at 775.537 kb on + strand, within PS417_03370 at 775.537 kb on + strand, within PS417_03370 at 775.582 kb on + strand, within PS417_03370 at 775.583 kb on - strand, within PS417_03370 at 775.700 kb on + strand, within PS417_03370 at 775.700 kb on + strand, within PS417_03370 at 775.700 kb on + strand, within PS417_03370 at 775.700 kb on + strand, within PS417_03370 at 775.701 kb on - strand, within PS417_03370 at 775.720 kb on + strand, within PS417_03370 at 775.720 kb on + strand, within PS417_03370 at 775.721 kb on - strand, within PS417_03370 at 775.721 kb on - strand, within PS417_03370 at 775.723 kb on + strand, within PS417_03370 at 775.724 kb on - strand, within PS417_03370 at 775.724 kb on - strand, within PS417_03370 at 775.724 kb on - strand, within PS417_03370 at 775.786 kb on + strand, within PS417_03370 at 775.786 kb on + strand, within PS417_03370 at 775.903 kb on + strand, within PS417_03370 at 775.903 kb on + strand, within PS417_03370 at 776.076 kb on + strand, within PS417_03370 at 776.076 kb on + strand, within PS417_03370 at 776.140 kb on + strand, within PS417_03370 at 776.140 kb on + strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.494 kb on + strand at 776.494 kb on + strand at 776.626 kb on - strand at 776.662 kb on + strand at 776.663 kb on - strand at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.840 kb on + strand, within PS417_03375 at 776.994 kb on + strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 777.020 kb on + strand, within PS417_03375 at 777.031 kb on - strand, within PS417_03375 at 777.252 kb on + strand, within PS417_03380 at 777.454 kb on - strand, within PS417_03380
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 774,557 + PS417_03365 0.57 -1.5 774,557 + PS417_03365 0.57 +0.2 774,557 + PS417_03365 0.57 +0.6 774,558 - PS417_03365 0.57 +0.1 774,767 - PS417_03365 0.88 +0.2 774,767 - PS417_03365 0.88 +0.2 774,774 - PS417_03365 0.89 +0.6 774,803 + +0.1 774,840 + +0.2 774,854 + -0.3 774,855 - +0.3 774,855 - +0.3 774,909 - +0.1 775,043 + -0.6 775,122 + +0.4 775,123 - +1.4 775,157 + -0.3 775,158 - +0.8 775,178 + -0.4 775,178 + -0.5 775,178 + -0.2 775,321 + +0.2 775,321 + -1.4 775,322 - +0.5 775,393 + PS417_03370 0.15 -0.2 775,393 + PS417_03370 0.15 -0.0 775,394 - PS417_03370 0.15 +1.3 775,414 + PS417_03370 0.17 +0.4 775,537 + PS417_03370 0.26 -0.4 775,537 + PS417_03370 0.26 -0.1 775,582 + PS417_03370 0.30 +0.0 775,583 - PS417_03370 0.30 -0.1 775,700 + PS417_03370 0.39 +1.1 775,700 + PS417_03370 0.39 +2.3 775,700 + PS417_03370 0.39 -0.4 775,700 + PS417_03370 0.39 -0.9 775,701 - PS417_03370 0.39 +0.6 775,720 + PS417_03370 0.40 -0.3 775,720 + PS417_03370 0.40 +0.6 775,721 - PS417_03370 0.40 -0.9 775,721 - PS417_03370 0.40 +0.5 775,723 + PS417_03370 0.40 -1.0 775,724 - PS417_03370 0.40 +1.9 775,724 - PS417_03370 0.40 +1.2 775,724 - PS417_03370 0.40 -0.3 775,786 + PS417_03370 0.45 +0.7 775,786 + PS417_03370 0.45 -0.3 775,903 + PS417_03370 0.54 +0.5 775,903 + PS417_03370 0.54 -0.0 776,076 + PS417_03370 0.67 -0.3 776,076 + PS417_03370 0.67 +0.7 776,140 + PS417_03370 0.72 +0.7 776,140 + PS417_03370 0.72 +1.1 776,141 - PS417_03370 0.72 +0.9 776,141 - PS417_03370 0.72 -0.1 776,141 - PS417_03370 0.72 +0.3 776,494 + +0.9 776,494 + -1.8 776,626 - +0.2 776,662 + +1.3 776,663 - +0.3 776,817 - PS417_03375 0.24 -1.0 776,817 - PS417_03375 0.24 -1.6 776,817 - PS417_03375 0.24 +0.4 776,840 + PS417_03375 0.31 -0.3 776,994 + PS417_03375 0.77 -1.5 776,995 - PS417_03375 0.78 -0.2 776,995 - PS417_03375 0.78 -1.4 777,020 + PS417_03375 0.85 -0.4 777,031 - PS417_03375 0.89 +0.3 777,252 + PS417_03380 0.33 -0.3 777,454 - PS417_03380 0.79 -0.0
Or see this region's nucleotide sequence