Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03185 and PS417_03190 are separated by 144 nucleotides PS417_03190 and PS417_03195 are separated by 118 nucleotides
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
PS417_03190: PS417_03190 - antibiotic biosynthesis monooxygenase, at 730,477 to 730,770
_03190
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
Position (kb) 730
731 Strain fitness (log2 ratio) -1
0
1
2
3 at 729.522 kb on - strand, within PS417_03185 at 729.522 kb on - strand at 729.996 kb on + strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 730.024 kb on - strand, within PS417_03185 at 730.068 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.313 kb on + strand at 730.313 kb on + strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.317 kb on - strand at 730.534 kb on - strand, within PS417_03190 at 730.610 kb on + strand, within PS417_03190 at 730.649 kb on + strand, within PS417_03190 at 730.650 kb on - strand, within PS417_03190 at 730.770 kb on + strand at 730.804 kb on + strand at 730.804 kb on + strand at 730.805 kb on - strand at 730.805 kb on - strand at 730.817 kb on - strand at 730.832 kb on - strand at 730.920 kb on + strand at 730.921 kb on - strand at 730.921 kb on - strand at 730.921 kb on - strand at 731.024 kb on - strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.467 kb on + strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.606 kb on + strand, within PS417_03195 at 731.607 kb on - strand, within PS417_03195
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 729,522 - PS417_03185 0.20 +0.2 729,522 - -1.2 729,996 + PS417_03185 0.67 -0.0 729,997 - PS417_03185 0.67 -0.4 729,997 - PS417_03185 0.67 -0.4 730,024 - PS417_03185 0.70 +0.5 730,068 - PS417_03185 0.74 +0.1 730,148 - PS417_03185 0.82 -0.2 730,148 - PS417_03185 0.82 -0.5 730,148 - PS417_03185 0.82 -0.4 730,313 + +0.3 730,313 + -0.2 730,314 - -0.1 730,314 - +0.2 730,314 - +1.6 730,314 - +0.3 730,317 - +0.2 730,534 - PS417_03190 0.19 +0.1 730,610 + PS417_03190 0.45 -0.1 730,649 + PS417_03190 0.59 +3.7 730,650 - PS417_03190 0.59 -1.6 730,770 + +0.2 730,804 + +0.5 730,804 + +0.1 730,805 - -0.2 730,805 - -0.2 730,817 - -0.4 730,832 - +0.6 730,920 + -0.4 730,921 - +0.0 730,921 - -1.3 730,921 - +0.3 731,024 - PS417_03195 0.15 -0.6 731,465 + PS417_03195 0.62 -0.2 731,465 + PS417_03195 0.62 +2.3 731,465 + PS417_03195 0.62 -0.2 731,465 + PS417_03195 0.62 -0.0 731,465 + PS417_03195 0.62 +0.2 731,465 + PS417_03195 0.62 +0.3 731,465 + PS417_03195 0.62 -0.9 731,466 - PS417_03195 0.62 +0.2 731,466 - PS417_03195 0.62 +0.3 731,466 - PS417_03195 0.62 -0.3 731,466 - PS417_03195 0.62 -0.4 731,467 + PS417_03195 0.62 -0.1 731,468 - PS417_03195 0.62 +0.0 731,468 - PS417_03195 0.62 +0.6 731,468 - PS417_03195 0.62 -0.9 731,606 + PS417_03195 0.77 +0.0 731,607 - PS417_03195 0.77 -0.1
Or see this region's nucleotide sequence