Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03150 and PS417_03155 are separated by 145 nucleotides PS417_03155 and PS417_03160 overlap by 4 nucleotides PS417_03160 and PS417_03165 are separated by 66 nucleotides PS417_03165 and PS417_03170 are separated by 147 nucleotides PS417_03170 and PS417_03175 are separated by 85 nucleotides
PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165
_03150
PS417_03155: PS417_03155 - transcriptional regulator, at 724,311 to 724,712
_03155
PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910
_03160
PS417_03165: PS417_03165 - hypothetical protein, at 726,977 to 727,357
_03165
PS417_03170: PS417_03170 - copper resistance protein CopZ, at 727,505 to 727,702
_03170
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -1
0
1
2
3 at 723.838 kb on - strand, within PS417_03150 at 723.903 kb on - strand, within PS417_03150 at 723.966 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 724.294 kb on + strand at 724.566 kb on - strand, within PS417_03155 at 724.600 kb on - strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.860 kb on + strand at 724.860 kb on + strand at 724.899 kb on + strand at 724.900 kb on - strand at 725.762 kb on - strand, within PS417_03160 at 725.762 kb on - strand, within PS417_03160 at 726.402 kb on + strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.406 kb on + strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.493 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.496 kb on - strand, within PS417_03160 at 726.978 kb on + strand at 726.979 kb on - strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.030 kb on + strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.063 kb on + strand, within PS417_03165 at 727.215 kb on + strand, within PS417_03165 at 727.279 kb on - strand, within PS417_03165 at 727.418 kb on + strand at 727.683 kb on - strand at 727.713 kb on + strand at 727.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 723,838 - PS417_03150 0.63 -0.3 723,903 - PS417_03150 0.71 -0.3 723,966 - PS417_03150 0.78 -0.1 723,997 - PS417_03150 0.81 +0.8 723,997 - PS417_03150 0.81 -0.2 724,294 + -1.0 724,566 - PS417_03155 0.63 -0.3 724,600 - PS417_03155 0.72 +1.2 724,654 + PS417_03155 0.85 +0.2 724,654 + PS417_03155 0.85 -0.1 724,860 + +0.7 724,860 + +1.9 724,899 + +0.4 724,900 - +0.1 725,762 - PS417_03160 0.48 +2.2 725,762 - PS417_03160 0.48 +0.5 726,402 + PS417_03160 0.77 +2.2 726,403 - PS417_03160 0.77 +0.2 726,403 - PS417_03160 0.77 +1.1 726,406 + PS417_03160 0.77 +1.6 726,407 - PS417_03160 0.77 -0.2 726,407 - PS417_03160 0.77 -0.5 726,407 - PS417_03160 0.77 +0.0 726,407 - PS417_03160 0.77 +0.6 726,493 + PS417_03160 0.81 +3.7 726,495 + PS417_03160 0.81 +1.1 726,495 + PS417_03160 0.81 -0.8 726,496 - PS417_03160 0.81 +0.6 726,978 + +0.5 726,979 - +0.5 727,005 + -0.9 727,005 + -0.1 727,005 + -0.2 727,005 + -0.5 727,005 + -0.2 727,006 - +1.0 727,006 - -0.2 727,006 - +0.1 727,006 - -0.4 727,030 + PS417_03165 0.14 +0.6 727,044 - PS417_03165 0.18 +0.3 727,044 - PS417_03165 0.18 -0.4 727,063 + PS417_03165 0.23 -0.5 727,215 + PS417_03165 0.62 +0.3 727,279 - PS417_03165 0.79 +0.0 727,418 + -0.5 727,683 - -0.3 727,713 + +0.1 727,801 + -0.2
Or see this region's nucleotide sequence