Strain Fitness in Pseudomonas simiae WCS417 around PS417_03110

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03105 and PS417_03110 are separated by 19 nucleotidesPS417_03110 and PS417_03115 are separated by 332 nucleotidesPS417_03115 and PS417_03120 are separated by 58 nucleotides PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781 _03105 PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742 _03110 PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266 _03115 PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729 _03120 Position (kb) 713 714 715Strain fitness (log2 ratio) -1 0 1 2at 712.944 kb on - strand, within PS417_03105at 712.944 kb on - strand, within PS417_03105at 713.039 kb on + strand, within PS417_03105at 713.039 kb on + strand, within PS417_03105at 713.040 kb on - strand, within PS417_03105at 713.647 kb on + strand, within PS417_03105at 713.647 kb on + strand, within PS417_03105at 713.648 kb on - strand, within PS417_03105at 713.925 kb on + strand, within PS417_03110at 714.066 kb on - strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.289 kb on - strand, within PS417_03110at 714.445 kb on + strand, within PS417_03110at 714.535 kb on + strand, within PS417_03110at 714.665 kb on + strandat 714.796 kb on - strandat 714.824 kb on + strandat 714.846 kb on + strandat 714.846 kb on + strandat 714.948 kb on + strandat 714.959 kb on + strandat 714.970 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.033 kb on - strandat 715.033 kb on - strandat 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.103 kb on - strand, within PS417_03115at 715.131 kb on + strand, within PS417_03115at 715.132 kb on - strand, within PS417_03115at 715.278 kb on + strandat 715.278 kb on + strandat 715.278 kb on + strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.624 kb on + strand, within PS417_03120at 715.625 kb on - strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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712,944 - PS417_03105 0.31 -0.0
712,944 - PS417_03105 0.31 +0.2
713,039 + PS417_03105 0.39 -0.3
713,039 + PS417_03105 0.39 +0.9
713,040 - PS417_03105 0.39 -0.4
713,647 + PS417_03105 0.89 +0.2
713,647 + PS417_03105 0.89 -1.0
713,648 - PS417_03105 0.89 +0.3
713,925 + PS417_03110 0.13 +2.6
714,066 - PS417_03110 0.28 -0.2
714,278 + PS417_03110 0.51 -0.1
714,278 + PS417_03110 0.51 +0.2
714,278 + PS417_03110 0.51 -0.5
714,278 + PS417_03110 0.51 -0.2
714,278 + PS417_03110 0.51 +0.1
714,278 + PS417_03110 0.51 +0.3
714,278 + PS417_03110 0.51 +0.2
714,278 + PS417_03110 0.51 -1.0
714,279 - PS417_03110 0.51 +0.0
714,279 - PS417_03110 0.51 -0.5
714,279 - PS417_03110 0.51 -1.0
714,279 - PS417_03110 0.51 -0.1
714,279 - PS417_03110 0.51 +0.6
714,289 - PS417_03110 0.52 +1.1
714,445 + PS417_03110 0.68 +0.2
714,535 + PS417_03110 0.78 +2.4
714,665 + -0.1
714,796 - +0.2
714,824 + -0.5
714,846 + +0.6
714,846 + -1.2
714,948 + +1.2
714,959 + -0.2
714,970 + +0.3
715,029 + +0.6
715,029 + +0.1
715,029 + +0.2
715,033 - +1.1
715,033 - +0.2
715,102 + PS417_03115 0.14 -0.6
715,102 + PS417_03115 0.14 -1.2
715,102 + PS417_03115 0.14 +0.3
715,102 + PS417_03115 0.14 +0.2
715,102 + PS417_03115 0.14 -0.4
715,103 - PS417_03115 0.15 -1.3
715,131 + PS417_03115 0.29 -1.6
715,132 - PS417_03115 0.30 -0.1
715,278 + -0.6
715,278 + +0.2
715,278 + +0.0
715,279 - -0.2
715,279 - +0.1
715,279 - -0.8
715,511 - PS417_03120 0.46 +0.8
715,511 - PS417_03120 0.46 -0.2
715,511 - PS417_03120 0.46 +0.4
715,624 + PS417_03120 0.74 +0.3
715,625 - PS417_03120 0.74 -0.5
715,667 + PS417_03120 0.84 +1.1
715,667 + PS417_03120 0.84 -0.1

Or see this region's nucleotide sequence