Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02895 and PS417_02900 are separated by 38 nucleotides PS417_02900 and PS417_02905 overlap by 8 nucleotides PS417_02905 and PS417_02910 overlap by 1 nucleotides
PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772
_02895
PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157
_02900
PS417_02905: PS417_02905 - precorrin isomerase, at 663,150 to 663,776
_02905
PS417_02910: PS417_02910 - precorrin-2 C20-methyltransferase, at 663,776 to 664,507
_02910
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.334 kb on + strand, within PS417_02895 at 661.334 kb on + strand, within PS417_02895 at 661.532 kb on - strand, within PS417_02895 at 661.676 kb on + strand at 661.750 kb on - strand at 661.750 kb on - strand at 661.772 kb on + strand at 661.772 kb on + strand at 661.773 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.834 kb on - strand at 661.834 kb on - strand at 661.892 kb on - strand at 662.027 kb on + strand, within PS417_02900 at 662.651 kb on + strand, within PS417_02900 at 663.044 kb on + strand at 663.101 kb on - strand at 663.160 kb on - strand at 664.008 kb on - strand, within PS417_02910 at 664.124 kb on + strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 661,334 + PS417_02895 0.64 -0.4 661,334 + PS417_02895 0.64 -0.9 661,532 - PS417_02895 0.80 -1.5 661,676 + -2.6 661,750 - -0.0 661,750 - -0.9 661,772 + -0.6 661,772 + -0.7 661,773 - -0.0 661,777 - -0.1 661,777 - +0.1 661,777 - +0.0 661,777 - -1.1 661,777 - +0.1 661,834 - +2.4 661,834 - +0.3 661,892 - +0.5 662,027 + PS417_02900 0.16 +0.4 662,651 + PS417_02900 0.62 -1.5 663,044 + -1.0 663,101 - -0.4 663,160 - -0.6 664,008 - PS417_02910 0.32 -0.7 664,124 + PS417_02910 0.48 -0.8 664,125 - PS417_02910 0.48 -0.3 664,125 - PS417_02910 0.48 -0.5 664,130 + PS417_02910 0.48 -1.0 664,130 + PS417_02910 0.48 +0.3
Or see this region's nucleotide sequence