Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00270 and PS417_00275 are separated by 77 nucleotides PS417_00275 and PS417_00280 are separated by 223 nucleotides PS417_00280 and PS417_00285 are separated by 227 nucleotides
PS417_00270: PS417_00270 - alcohol dehydrogenase, at 52,488 to 53,750
_00270
PS417_00275: PS417_00275 - hypothetical protein, at 53,828 to 54,085
_00275
PS417_00280: PS417_00280 - radical SAM protein, at 54,309 to 55,367
_00280
PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326
_00285
Position (kb) 54
55
56 Strain fitness (log2 ratio) -1
0
1 at 53.370 kb on + strand, within PS417_00270 at 53.371 kb on - strand, within PS417_00270 at 53.371 kb on - strand, within PS417_00270 at 53.371 kb on - strand, within PS417_00270 at 53.433 kb on + strand, within PS417_00270 at 53.433 kb on + strand, within PS417_00270 at 53.434 kb on - strand, within PS417_00270 at 53.434 kb on - strand, within PS417_00270 at 53.434 kb on - strand, within PS417_00270 at 53.550 kb on - strand, within PS417_00270 at 53.568 kb on - strand, within PS417_00270 at 53.684 kb on + strand at 53.684 kb on + strand at 53.722 kb on + strand at 53.722 kb on + strand at 53.778 kb on - strand at 53.793 kb on - strand at 53.820 kb on + strand at 53.949 kb on + strand, within PS417_00275 at 53.949 kb on + strand, within PS417_00275 at 53.949 kb on + strand, within PS417_00275 at 53.949 kb on + strand, within PS417_00275 at 53.979 kb on + strand, within PS417_00275 at 53.979 kb on + strand, within PS417_00275 at 53.980 kb on - strand, within PS417_00275 at 53.980 kb on - strand, within PS417_00275 at 54.085 kb on + strand at 54.085 kb on + strand at 54.085 kb on + strand at 54.086 kb on - strand at 54.087 kb on + strand at 54.110 kb on + strand at 54.110 kb on + strand at 54.129 kb on - strand at 54.191 kb on - strand at 54.194 kb on + strand at 54.195 kb on - strand at 54.195 kb on - strand at 54.197 kb on + strand at 54.198 kb on - strand at 54.282 kb on - strand at 54.302 kb on + strand at 54.303 kb on - strand at 54.543 kb on + strand, within PS417_00280 at 54.543 kb on + strand at 54.543 kb on + strand, within PS417_00280 at 54.544 kb on - strand, within PS417_00280 at 54.544 kb on - strand, within PS417_00280 at 54.544 kb on - strand, within PS417_00280 at 54.549 kb on + strand, within PS417_00280 at 54.550 kb on - strand, within PS417_00280 at 54.550 kb on - strand, within PS417_00280 at 54.571 kb on - strand, within PS417_00280 at 54.579 kb on - strand, within PS417_00280 at 54.579 kb on - strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.666 kb on + strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.667 kb on - strand, within PS417_00280 at 54.730 kb on - strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.077 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.200 kb on + strand, within PS417_00280 at 55.201 kb on - strand, within PS417_00280 at 55.201 kb on - strand at 55.272 kb on - strand at 55.314 kb on - strand at 55.365 kb on + strand at 55.525 kb on + strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.577 kb on + strand at 55.610 kb on - strand at 55.939 kb on - strand, within PS417_00285 at 55.939 kb on - strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 53,370 + PS417_00270 0.70 +0.5 53,371 - PS417_00270 0.70 -0.1 53,371 - PS417_00270 0.70 -1.0 53,371 - PS417_00270 0.70 -0.9 53,433 + PS417_00270 0.75 -0.5 53,433 + PS417_00270 0.75 +1.1 53,434 - PS417_00270 0.75 +0.0 53,434 - PS417_00270 0.75 -0.9 53,434 - PS417_00270 0.75 +1.5 53,550 - PS417_00270 0.84 -0.4 53,568 - PS417_00270 0.86 +0.3 53,684 + -0.2 53,684 + -0.1 53,722 + -1.0 53,722 + -0.2 53,778 - -0.1 53,793 - +0.2 53,820 + +0.1 53,949 + PS417_00275 0.47 -1.4 53,949 + PS417_00275 0.47 +0.5 53,949 + PS417_00275 0.47 -0.3 53,949 + PS417_00275 0.47 +0.3 53,979 + PS417_00275 0.59 +0.4 53,979 + PS417_00275 0.59 -0.1 53,980 - PS417_00275 0.59 -0.2 53,980 - PS417_00275 0.59 +0.3 54,085 + +0.1 54,085 + +0.3 54,085 + +0.2 54,086 - -0.3 54,087 + +1.3 54,110 + -0.1 54,110 + +0.1 54,129 - -0.5 54,191 - -1.7 54,194 + -0.2 54,195 - -0.5 54,195 - +1.2 54,197 + +0.0 54,198 - +0.3 54,282 - +0.6 54,302 + -0.2 54,303 - +0.4 54,543 + PS417_00280 0.22 -1.2 54,543 + -0.2 54,543 + PS417_00280 0.22 +1.4 54,544 - PS417_00280 0.22 -0.1 54,544 - PS417_00280 0.22 -0.2 54,544 - PS417_00280 0.22 +0.3 54,549 + PS417_00280 0.23 +0.3 54,550 - PS417_00280 0.23 -0.1 54,550 - PS417_00280 0.23 +0.3 54,571 - PS417_00280 0.25 -1.1 54,579 - PS417_00280 0.25 -0.8 54,579 - PS417_00280 0.25 +0.1 54,666 + PS417_00280 0.34 -0.2 54,666 + PS417_00280 0.34 +0.1 54,666 + PS417_00280 0.34 -0.2 54,667 - PS417_00280 0.34 -0.2 54,667 - PS417_00280 0.34 -0.5 54,730 - PS417_00280 0.40 -0.0 55,077 + PS417_00280 0.73 +0.0 55,077 + PS417_00280 0.73 +0.5 55,200 + PS417_00280 0.84 +0.4 55,200 + PS417_00280 0.84 +0.4 55,201 - PS417_00280 0.84 -0.1 55,201 - +0.8 55,272 - -0.2 55,314 - -0.4 55,365 + +1.1 55,525 + +1.2 55,526 - -0.0 55,526 - -0.3 55,526 - -0.0 55,577 + +0.4 55,610 - -0.2 55,939 - PS417_00285 0.47 +0.4 55,939 - PS417_00285 0.47 -0.5 56,196 + PS417_00285 0.82 -0.1 56,196 + PS417_00285 0.82 +0.6 56,201 - PS417_00285 0.83 -0.5 56,201 - PS417_00285 0.83 +0.3 56,201 - PS417_00285 0.83 +0.5 56,216 + PS417_00285 0.85 -1.4 56,216 + PS417_00285 0.85 -0.1 56,216 + PS417_00285 0.85 -0.9 56,216 + PS417_00285 0.85 -1.2 56,324 + -0.4
Or see this region's nucleotide sequence