Strain Fitness in Pseudomonas simiae WCS417 around PS417_27525
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 5,937,681 | + | PS417_27520 | 0.21 | +0.1 | |
| 5,937,906 | + | PS417_27520 | 0.41 | +0.3 | |
| 5,937,966 | + | PS417_27520 | 0.46 | -0.2 | |
| 5,937,966 | + | PS417_27520 | 0.46 | +0.9 | |
| 5,937,968 | + | PS417_27520 | 0.46 | +2.5 | |
| 5,937,969 | - | PS417_27520 | 0.46 | +0.1 | |
| 5,938,183 | + | PS417_27520 | 0.66 | -1.1 | |
| 5,938,543 | + | -0.1 | |||
| 5,938,566 | + | +0.2 | |||
| 5,938,567 | - | -0.2 | |||
| 5,940,299 | - | -0.3 | |||
| 5,940,315 | - | -0.1 | |||
| 5,940,330 | + | +0.2 |
Or see this region's nucleotide sequence