Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27260 and PS417_27265 are separated by 163 nucleotides PS417_27265 and PS417_27270 are separated by 161 nucleotides
PS417_27260: PS417_27260 - iron ABC transporter permease, at 5,883,768 to 5,885,384
_27260
PS417_27265: PS417_27265 - iron ABC transporter substrate-binding protein, at 5,885,548 to 5,886,552
_27265
PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937
_27270
Position (kb) 5885
5886
5887 Strain fitness (log2 ratio) -1
0
1
2
3 at 5884.630 kb on + strand, within PS417_27260 at 5884.714 kb on + strand, within PS417_27260 at 5884.714 kb on + strand, within PS417_27260 at 5884.715 kb on - strand, within PS417_27260 at 5884.715 kb on - strand, within PS417_27260 at 5884.715 kb on - strand, within PS417_27260 at 5884.823 kb on + strand, within PS417_27260 at 5884.930 kb on + strand, within PS417_27260 at 5884.936 kb on + strand, within PS417_27260 at 5884.936 kb on + strand, within PS417_27260 at 5884.937 kb on - strand, within PS417_27260 at 5884.943 kb on - strand, within PS417_27260 at 5885.086 kb on + strand, within PS417_27260 at 5885.087 kb on - strand, within PS417_27260 at 5885.285 kb on + strand at 5885.357 kb on - strand at 5885.549 kb on + strand at 5885.888 kb on + strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.892 kb on - strand, within PS417_27265 at 5885.892 kb on - strand, within PS417_27265 at 5885.895 kb on + strand, within PS417_27265 at 5885.895 kb on + strand, within PS417_27265 at 5886.060 kb on - strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.123 kb on - strand, within PS417_27265 at 5886.201 kb on + strand, within PS417_27265 at 5886.202 kb on - strand at 5886.202 kb on - strand, within PS417_27265 at 5886.419 kb on + strand, within PS417_27265 at 5886.419 kb on + strand, within PS417_27265 at 5886.420 kb on - strand, within PS417_27265 at 5886.420 kb on - strand, within PS417_27265 at 5886.464 kb on + strand at 5886.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,884,630 + PS417_27260 0.53 -1.7 5,884,714 + PS417_27260 0.59 -0.6 5,884,714 + PS417_27260 0.59 +1.2 5,884,715 - PS417_27260 0.59 -0.1 5,884,715 - PS417_27260 0.59 -0.9 5,884,715 - PS417_27260 0.59 +0.2 5,884,823 + PS417_27260 0.65 -0.5 5,884,930 + PS417_27260 0.72 -0.1 5,884,936 + PS417_27260 0.72 +0.1 5,884,936 + PS417_27260 0.72 +0.0 5,884,937 - PS417_27260 0.72 +0.2 5,884,943 - PS417_27260 0.73 -0.2 5,885,086 + PS417_27260 0.82 -0.7 5,885,087 - PS417_27260 0.82 -0.3 5,885,285 + +0.3 5,885,357 - -0.4 5,885,549 + -0.6 5,885,888 + PS417_27265 0.34 +2.1 5,885,889 - PS417_27265 0.34 -0.4 5,885,889 - PS417_27265 0.34 -0.3 5,885,889 - PS417_27265 0.34 +0.2 5,885,889 - PS417_27265 0.34 +0.3 5,885,891 + PS417_27265 0.34 -0.8 5,885,891 + PS417_27265 0.34 -0.4 5,885,891 + PS417_27265 0.34 -1.1 5,885,892 - PS417_27265 0.34 -0.1 5,885,892 - PS417_27265 0.34 +0.4 5,885,895 + PS417_27265 0.35 +0.0 5,885,895 + PS417_27265 0.35 -0.1 5,886,060 - PS417_27265 0.51 +1.4 5,886,122 + PS417_27265 0.57 +0.0 5,886,122 + PS417_27265 0.57 +0.0 5,886,122 + PS417_27265 0.57 +0.9 5,886,123 - PS417_27265 0.57 -0.2 5,886,201 + PS417_27265 0.65 -0.1 5,886,202 - +3.1 5,886,202 - PS417_27265 0.65 +0.5 5,886,419 + PS417_27265 0.87 +0.6 5,886,419 + PS417_27265 0.87 +0.2 5,886,420 - PS417_27265 0.87 +0.1 5,886,420 - PS417_27265 0.87 +0.8 5,886,464 + +0.6 5,886,765 + +0.4
Or see this region's nucleotide sequence