Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27155 and PS417_27160 overlap by 4 nucleotides PS417_27160 and PS417_27165 are separated by 9 nucleotides PS417_27165 and PS417_27170 are separated by 25 nucleotides
PS417_27155: PS417_27155 - aliphatic sulfonates transport ATP-binding subunit, at 5,862,542 to 5,863,348
_27155
PS417_27160: PS417_27160 - alkanesulfonate transporter permease subunit, at 5,863,345 to 5,864,133
_27160
PS417_27165: PS417_27165 - alkanesulfonate monooxygenase, at 5,864,143 to 5,865,291
_27165
PS417_27170: PS417_27170 - ABC transporter substrate-binding protein, at 5,865,317 to 5,866,285
_27170
Position (kb) 5864
5865
5866 Strain fitness (log2 ratio) -1
0
1
2 at 5863.240 kb on + strand, within PS417_27155 at 5863.448 kb on + strand, within PS417_27160 at 5863.448 kb on + strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.658 kb on + strand, within PS417_27160 at 5863.658 kb on + strand, within PS417_27160 at 5863.659 kb on - strand, within PS417_27160 at 5863.709 kb on + strand, within PS417_27160 at 5863.710 kb on - strand, within PS417_27160 at 5863.721 kb on + strand, within PS417_27160 at 5864.029 kb on - strand, within PS417_27160 at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.081 kb on - strand at 5864.081 kb on - strand at 5864.126 kb on + strand at 5864.126 kb on + strand at 5864.126 kb on + strand at 5864.127 kb on - strand at 5864.144 kb on + strand at 5864.144 kb on + strand at 5864.145 kb on - strand at 5864.207 kb on + strand at 5864.207 kb on + strand at 5864.208 kb on - strand at 5864.208 kb on - strand at 5864.310 kb on + strand, within PS417_27165 at 5864.310 kb on + strand, within PS417_27165 at 5864.311 kb on - strand, within PS417_27165 at 5864.617 kb on - strand, within PS417_27165 at 5864.802 kb on - strand, within PS417_27165 at 5864.843 kb on + strand, within PS417_27165 at 5864.844 kb on - strand, within PS417_27165 at 5864.976 kb on + strand, within PS417_27165 at 5865.242 kb on + strand at 5865.399 kb on + strand at 5865.399 kb on + strand at 5865.400 kb on - strand at 5865.640 kb on - strand, within PS417_27170 at 5865.640 kb on - strand, within PS417_27170 at 5865.839 kb on + strand, within PS417_27170 at 5865.840 kb on - strand, within PS417_27170 at 5865.849 kb on + strand at 5865.850 kb on - strand, within PS417_27170 at 5866.170 kb on + strand, within PS417_27170
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,863,240 + PS417_27155 0.86 -0.4 5,863,448 + PS417_27160 0.13 -0.3 5,863,448 + PS417_27160 0.13 -0.2 5,863,449 - PS417_27160 0.13 -0.1 5,863,449 - PS417_27160 0.13 +1.5 5,863,449 - PS417_27160 0.13 -0.8 5,863,658 + PS417_27160 0.40 +0.3 5,863,658 + PS417_27160 0.40 -0.4 5,863,659 - PS417_27160 0.40 -0.0 5,863,709 + PS417_27160 0.46 +0.8 5,863,710 - PS417_27160 0.46 +0.9 5,863,721 + PS417_27160 0.48 -0.4 5,864,029 - PS417_27160 0.87 +1.1 5,864,080 + +0.5 5,864,080 + +0.1 5,864,080 + +0.0 5,864,080 + +0.5 5,864,081 - -1.0 5,864,081 - +0.0 5,864,126 + -0.3 5,864,126 + +1.2 5,864,126 + -0.8 5,864,127 - -0.0 5,864,144 + +0.5 5,864,144 + -0.2 5,864,145 - +1.0 5,864,207 + +0.2 5,864,207 + +0.5 5,864,208 - -0.3 5,864,208 - -0.0 5,864,310 + PS417_27165 0.15 -0.5 5,864,310 + PS417_27165 0.15 +0.6 5,864,311 - PS417_27165 0.15 +2.6 5,864,617 - PS417_27165 0.41 +1.2 5,864,802 - PS417_27165 0.57 -0.1 5,864,843 + PS417_27165 0.61 -0.8 5,864,844 - PS417_27165 0.61 -0.7 5,864,976 + PS417_27165 0.72 +0.5 5,865,242 + -1.6 5,865,399 + -0.0 5,865,399 + +1.5 5,865,400 - +0.8 5,865,640 - PS417_27170 0.33 +1.1 5,865,640 - PS417_27170 0.33 -0.6 5,865,839 + PS417_27170 0.54 +0.5 5,865,840 - PS417_27170 0.54 -0.4 5,865,849 + +1.4 5,865,850 - PS417_27170 0.55 -0.1 5,866,170 + PS417_27170 0.88 -0.2
Or see this region's nucleotide sequence