Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24600 and PS417_24605 are separated by 18 nucleotides PS417_24605 and PS417_24610 are separated by 17 nucleotides PS417_24610 and PS417_24615 are separated by 225 nucleotides PS417_24615 and PS417_24620 are separated by 128 nucleotides
PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999
_24600
PS417_24605: PS417_24605 - thiamine-phosphate pyrophosphorylase, at 5,340,018 to 5,340,641
_24605
PS417_24610: PS417_24610 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,340,659 to 5,341,942
_24610
PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722
_24615
PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177
_24620
Position (kb) 5340
5341
5342 Strain fitness (log2 ratio) -2
-1
0
1 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.703 kb on + strand, within PS417_24600 at 5339.820 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.913 kb on + strand, within PS417_24600 at 5339.914 kb on - strand, within PS417_24600 at 5340.003 kb on + strand at 5340.003 kb on + strand at 5340.081 kb on + strand, within PS417_24605 at 5340.197 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5340.384 kb on + strand, within PS417_24605 at 5342.044 kb on + strand at 5342.044 kb on + strand at 5342.083 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.099 kb on + strand at 5342.106 kb on + strand at 5342.155 kb on + strand at 5342.432 kb on + strand, within PS417_24615 at 5342.666 kb on + strand, within PS417_24615 at 5342.667 kb on - strand at 5342.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,339,703 + PS417_24600 0.63 +0.4 5,339,703 + PS417_24600 0.63 +0.5 5,339,703 + PS417_24600 0.63 +0.6 5,339,820 + PS417_24600 0.77 -0.1 5,339,913 + PS417_24600 0.89 +0.5 5,339,913 + PS417_24600 0.89 +0.2 5,339,913 + PS417_24600 0.89 -0.3 5,339,914 - PS417_24600 0.89 +0.4 5,340,003 + -0.7 5,340,003 + +0.7 5,340,081 + PS417_24605 0.10 -0.4 5,340,197 + PS417_24605 0.29 -2.3 5,340,384 + PS417_24605 0.59 +0.2 5,340,384 + PS417_24605 0.59 -2.6 5,340,384 + PS417_24605 0.59 +0.5 5,342,044 + -0.2 5,342,044 + -0.9 5,342,083 + -0.8 5,342,099 + -0.1 5,342,099 + -2.7 5,342,099 + -0.1 5,342,099 + -0.1 5,342,106 + -1.3 5,342,155 + +0.4 5,342,432 + PS417_24615 0.48 -0.0 5,342,666 + PS417_24615 0.90 +0.0 5,342,667 - +0.3 5,342,852 + +0.3
Or see this region's nucleotide sequence