Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22705 and PS417_22710 are separated by 115 nucleotides PS417_22710 and PS417_22715 are separated by 148 nucleotides PS417_22715 and PS417_22720 are separated by 162 nucleotides
PS417_22705: PS417_22705 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 4,917,121 to 4,918,089
_22705
PS417_22710: PS417_22710 - TonB-dependent receptor, at 4,918,205 to 4,920,769
_22710
PS417_22715: PS417_22715 - heme oxygenase, at 4,920,918 to 4,921,526
_22715
PS417_22720: PS417_22720 - membrane protein, at 4,921,689 to 4,922,090
_22720
Position (kb)
4918
4919
4920
4921 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4917.326 kb on + strand, within PS417_22705 at 4917.531 kb on - strand, within PS417_22705 at 4917.531 kb on - strand, within PS417_22705 at 4917.994 kb on + strand at 4918.125 kb on - strand at 4918.125 kb on - strand at 4918.176 kb on + strand at 4918.176 kb on + strand at 4918.177 kb on - strand at 4918.177 kb on - strand at 4918.177 kb on - strand at 4918.178 kb on + strand at 4918.179 kb on - strand at 4918.179 kb on - strand at 4918.334 kb on + strand at 4918.335 kb on - strand at 4918.452 kb on + strand at 4918.684 kb on + strand, within PS417_22710 at 4918.685 kb on - strand, within PS417_22710 at 4918.701 kb on + strand, within PS417_22710 at 4918.701 kb on + strand, within PS417_22710 at 4918.760 kb on + strand, within PS417_22710 at 4918.865 kb on + strand, within PS417_22710 at 4918.865 kb on + strand, within PS417_22710 at 4918.925 kb on + strand, within PS417_22710 at 4919.139 kb on - strand, within PS417_22710 at 4919.453 kb on + strand, within PS417_22710 at 4919.453 kb on - strand, within PS417_22710 at 4919.534 kb on + strand, within PS417_22710 at 4919.534 kb on + strand, within PS417_22710 at 4919.612 kb on + strand, within PS417_22710 at 4919.775 kb on - strand, within PS417_22710 at 4919.843 kb on + strand, within PS417_22710 at 4919.844 kb on - strand, within PS417_22710 at 4919.844 kb on - strand, within PS417_22710 at 4919.844 kb on - strand, within PS417_22710 at 4919.906 kb on + strand, within PS417_22710 at 4919.907 kb on - strand, within PS417_22710 at 4919.907 kb on - strand, within PS417_22710 at 4919.907 kb on - strand, within PS417_22710 at 4919.966 kb on + strand, within PS417_22710 at 4919.967 kb on - strand, within PS417_22710 at 4919.984 kb on + strand, within PS417_22710 at 4920.072 kb on - strand, within PS417_22710 at 4920.072 kb on - strand at 4920.176 kb on + strand, within PS417_22710 at 4920.176 kb on + strand, within PS417_22710 at 4920.332 kb on + strand, within PS417_22710 at 4920.332 kb on + strand, within PS417_22710 at 4920.333 kb on - strand, within PS417_22710 at 4920.333 kb on - strand, within PS417_22710 at 4920.353 kb on + strand, within PS417_22710 at 4920.354 kb on - strand, within PS417_22710 at 4920.354 kb on - strand, within PS417_22710 at 4920.360 kb on - strand, within PS417_22710 at 4920.360 kb on - strand, within PS417_22710 at 4920.431 kb on + strand, within PS417_22710 at 4920.446 kb on + strand, within PS417_22710 at 4920.446 kb on + strand, within PS417_22710 at 4920.446 kb on + strand, within PS417_22710 at 4920.446 kb on + strand, within PS417_22710 at 4920.447 kb on - strand, within PS417_22710 at 4920.581 kb on + strand at 4920.621 kb on - strand at 4920.641 kb on + strand at 4920.642 kb on - strand at 4920.642 kb on - strand at 4920.669 kb on - strand at 4920.952 kb on + strand at 4920.978 kb on - strand at 4921.072 kb on - strand at 4921.072 kb on - strand, within PS417_22715 at 4921.313 kb on - strand, within PS417_22715 at 4921.484 kb on - strand at 4921.584 kb on + strand at 4921.599 kb on - strand at 4921.644 kb on + strand at 4921.749 kb on + strand, within PS417_22720 at 4921.749 kb on + strand, within PS417_22720 at 4921.749 kb on + strand, within PS417_22720 at 4921.750 kb on - strand, within PS417_22720 at 4921.750 kb on - strand, within PS417_22720
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,917,326 + PS417_22705 0.21 -0.8 4,917,531 - PS417_22705 0.42 -0.1 4,917,531 - PS417_22705 0.42 -0.2 4,917,994 + -1.2 4,918,125 - -0.5 4,918,125 - +0.1 4,918,176 + -0.3 4,918,176 + -0.2 4,918,177 - +0.1 4,918,177 - +0.4 4,918,177 - +0.4 4,918,178 + +0.3 4,918,179 - +1.1 4,918,179 - +1.5 4,918,334 + +0.4 4,918,335 - +0.4 4,918,452 + -0.0 4,918,684 + PS417_22710 0.19 +1.0 4,918,685 - PS417_22710 0.19 +1.0 4,918,701 + PS417_22710 0.19 +0.4 4,918,701 + PS417_22710 0.19 +0.1 4,918,760 + PS417_22710 0.22 +0.9 4,918,865 + PS417_22710 0.26 -0.1 4,918,865 + PS417_22710 0.26 +0.8 4,918,925 + PS417_22710 0.28 +2.6 4,919,139 - PS417_22710 0.36 -0.3 4,919,453 + PS417_22710 0.49 +0.8 4,919,453 - PS417_22710 0.49 +0.6 4,919,534 + PS417_22710 0.52 +1.7 4,919,534 + PS417_22710 0.52 -0.2 4,919,612 + PS417_22710 0.55 -0.5 4,919,775 - PS417_22710 0.61 -0.1 4,919,843 + PS417_22710 0.64 +0.1 4,919,844 - PS417_22710 0.64 +0.5 4,919,844 - PS417_22710 0.64 +0.5 4,919,844 - PS417_22710 0.64 +0.4 4,919,906 + PS417_22710 0.66 +0.6 4,919,907 - PS417_22710 0.66 -0.1 4,919,907 - PS417_22710 0.66 -0.4 4,919,907 - PS417_22710 0.66 +0.1 4,919,966 + PS417_22710 0.69 +0.7 4,919,967 - PS417_22710 0.69 -0.3 4,919,984 + PS417_22710 0.69 +1.6 4,920,072 - PS417_22710 0.73 +2.3 4,920,072 - +0.3 4,920,176 + PS417_22710 0.77 -1.4 4,920,176 + PS417_22710 0.77 +0.6 4,920,332 + PS417_22710 0.83 +0.9 4,920,332 + PS417_22710 0.83 -0.2 4,920,333 - PS417_22710 0.83 +0.1 4,920,333 - PS417_22710 0.83 -1.6 4,920,353 + PS417_22710 0.84 -0.3 4,920,354 - PS417_22710 0.84 +0.2 4,920,354 - PS417_22710 0.84 +1.3 4,920,360 - PS417_22710 0.84 +0.4 4,920,360 - PS417_22710 0.84 +1.8 4,920,431 + PS417_22710 0.87 -0.1 4,920,446 + PS417_22710 0.87 +2.8 4,920,446 + PS417_22710 0.87 -0.1 4,920,446 + PS417_22710 0.87 +0.1 4,920,446 + PS417_22710 0.87 +0.1 4,920,447 - PS417_22710 0.87 +0.1 4,920,581 + +0.0 4,920,621 - +0.3 4,920,641 + -0.7 4,920,642 - +0.2 4,920,642 - +0.5 4,920,669 - -0.0 4,920,952 + +0.9 4,920,978 - -0.5 4,921,072 - +0.3 4,921,072 - PS417_22715 0.25 +0.3 4,921,313 - PS417_22715 0.65 +0.4 4,921,484 - +0.7 4,921,584 + -0.9 4,921,599 - -0.1 4,921,644 + -0.0 4,921,749 + PS417_22720 0.15 -0.1 4,921,749 + PS417_22720 0.15 -0.5 4,921,749 + PS417_22720 0.15 -0.1 4,921,750 - PS417_22720 0.15 +0.4 4,921,750 - PS417_22720 0.15 +0.2
Or see this region's nucleotide sequence