Strain Fitness in Pseudomonas simiae WCS417 around PS417_20060

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,351,974	-		PS417_20050	0.61	-0.8
4,352,073	-		PS417_20050	0.72	+0.8
4,352,106	-		PS417_20050	0.76	-1.2
4,352,106	-		PS417_20050	0.76	-1.2
4,352,350	+				+0.1
4,352,413	+		PS417_20055	0.14	+0.5
4,352,737	-		PS417_20055	0.64	-1.0
4,352,737	-		PS417_20055	0.64	-0.3
4,352,737	-		PS417_20055	0.64	-0.3
4,353,000	-				+0.3
4,353,051	+				-1.0
4,353,052	-				+0.2
4,353,063	+				-0.9
4,353,063	+				-1.1
4,353,064	-				-0.7
4,353,064	-				-0.0
4,353,090	+				-1.0
4,353,174	+		PS417_20060	0.15	+0.8
4,353,174	+		PS417_20060	0.15	-0.2
4,353,174	+		PS417_20060	0.15	-1.2
4,353,175	-		PS417_20060	0.15	-0.4
4,353,175	-		PS417_20060	0.15	-0.9
4,353,175	-		PS417_20060	0.15	-0.7
4,353,175	-		PS417_20060	0.15	-2.0
4,353,175	-		PS417_20060	0.15	-1.0
4,353,175	-		PS417_20060	0.15	-1.2
4,353,175	-		PS417_20060	0.15	-1.3
4,353,175	-		PS417_20060	0.15	-0.9
4,353,175	-		PS417_20060	0.15	-0.5
4,353,179	-		PS417_20060	0.16	-0.5
4,353,322	-		PS417_20060	0.27	-0.8
4,353,447	+		PS417_20060	0.36	-0.3
4,353,447	+		PS417_20060	0.36	-0.0
4,353,448	-		PS417_20060	0.36	-0.3
4,353,543	+		PS417_20060	0.43	-2.1
4,353,543	+		PS417_20060	0.43	-0.7
4,353,543	+		PS417_20060	0.43	-0.3
4,353,728	+		PS417_20060	0.57	-0.6
4,353,729	-		PS417_20060	0.57	-0.7
4,353,738	-		PS417_20060	0.58	-0.4
4,353,749	-		PS417_20060	0.59	-0.8
4,354,113	+		PS417_20060	0.86	-0.2
4,354,114	-		PS417_20060	0.86	-0.9
4,355,039	+				-0.1
4,355,039	+				-0.6
4,355,040	-				+1.4
4,355,040	-				-0.3
4,355,040	-				-0.6
4,355,040	-				-0.2
4,355,041	+				-0.2
4,355,084	+				-1.0
4,355,157	+				+0.5
4,355,158	-				+0.2
4,355,158	-				+0.3
4,355,240	+				-0.6
4,355,243	+				-0.4
4,355,244	-				-0.7
4,355,244	-				-0.3