Strain Fitness in Pseudomonas simiae WCS417 around PS417_01890

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01885 and PS417_01890 are separated by 78 nucleotidesPS417_01890 and PS417_01895 are separated by 27 nucleotides PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726 _01885 PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425 _01890 PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135 _01895 Position (kb) 417 418 419Strain fitness (log2 ratio) -1 0 1 2 3at 416.869 kb on + strand, within PS417_01885at 416.870 kb on - strand, within PS417_01885at 416.870 kb on - strand, within PS417_01885at 417.132 kb on + strand, within PS417_01885at 417.621 kb on + strand, within PS417_01885at 417.622 kb on - strand, within PS417_01885at 417.806 kb on + strandat 417.807 kb on - strandat 417.824 kb on + strandat 417.825 kb on - strandat 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.899 kb on + strand, within PS417_01890at 417.900 kb on - strand, within PS417_01890at 417.914 kb on - strand, within PS417_01890at 418.152 kb on - strand, within PS417_01890at 418.193 kb on + strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.277 kb on - strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.307 kb on + strand, within PS417_01890at 418.436 kb on + strandat 418.436 kb on + strandat 418.437 kb on - strandat 418.437 kb on - strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.610 kb on + strandat 418.611 kb on - strandat 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895at 418.754 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 419.162 kb on - strand, within PS417_01895at 419.327 kb on + strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.356 kb on + strandat 419.356 kb on + strand, within PS417_01895

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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416,869 + PS417_01885 0.13 +0.3
416,870 - PS417_01885 0.13 +0.3
416,870 - PS417_01885 0.13 +0.3
417,132 + PS417_01885 0.40 -0.1
417,621 + PS417_01885 0.89 -0.6
417,622 - PS417_01885 0.89 +0.5
417,806 + +0.1
417,807 - -0.2
417,824 + +0.2
417,825 - +2.1
417,868 + PS417_01890 0.10 +1.3
417,868 + PS417_01890 0.10 +0.6
417,868 + PS417_01890 0.10 +0.4
417,899 + PS417_01890 0.15 -0.2
417,900 - PS417_01890 0.15 +0.2
417,914 - PS417_01890 0.18 -0.1
418,152 - PS417_01890 0.56 +0.0
418,193 + PS417_01890 0.62 +1.0
418,194 - PS417_01890 0.63 -0.2
418,194 - PS417_01890 0.63 +0.3
418,277 - PS417_01890 0.76 +0.2
418,304 + PS417_01890 0.80 +0.4
418,304 + PS417_01890 0.80 +1.6
418,307 + PS417_01890 0.81 +0.5
418,436 + +0.0
418,436 + -0.2
418,437 - +0.5
418,437 - -0.4
418,469 + +0.9
418,469 + -0.8
418,469 + +0.0
418,469 + +0.4
418,469 + +0.7
418,469 + +0.1
418,469 + -0.5
418,469 + +0.7
418,469 + +0.3
418,470 - +1.6
418,470 - +0.1
418,470 - -0.5
418,610 + -0.1
418,611 - -0.2
418,652 + PS417_01895 0.12 +0.7
418,652 + PS417_01895 0.12 +0.6
418,652 + PS417_01895 0.12 -1.3
418,754 + PS417_01895 0.18 +1.8
418,985 + PS417_01895 0.32 +0.3
418,985 + PS417_01895 0.32 -0.6
418,985 + PS417_01895 0.32 -0.8
418,985 + PS417_01895 0.32 +0.0
418,985 + PS417_01895 0.32 +0.8
418,986 - PS417_01895 0.32 +3.2
418,986 - PS417_01895 0.32 +1.2
418,986 - PS417_01895 0.32 -0.0
418,986 - PS417_01895 0.32 +0.8
419,162 - PS417_01895 0.42 -0.5
419,327 + PS417_01895 0.52 -0.2
419,328 - PS417_01895 0.52 -0.3
419,328 - PS417_01895 0.52 -1.5
419,328 - PS417_01895 0.52 -0.2
419,328 - PS417_01895 0.52 -1.6
419,356 + +2.2
419,356 + PS417_01895 0.54 -0.6

Or see this region's nucleotide sequence